miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 58971 0.7 0.998067
Target:  5'- cUCGaGGGAGACGGuGGccacCUGCAACCUGg -3'
miRNA:   3'- -AGCgCCUUUUGUU-CUa---GAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 156531 0.72 0.98749
Target:  5'- -aGCGGGAGGCGAGAUCccGgGACCc- -3'
miRNA:   3'- agCGCCUUUUGUUCUAGa-UgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 129931 0.66 0.999967
Target:  5'- gCGCGGcaccACGGcGGUCUACGgcacggACCUGg -3'
miRNA:   3'- aGCGCCuuu-UGUU-CUAGAUGU------UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 75016 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAACCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 155467 0.68 0.999713
Target:  5'- cUGCGccAGGCAGGA-CUGCAGCCg- -3'
miRNA:   3'- aGCGCcuUUUGUUCUaGAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 158782 0.73 0.985786
Target:  5'- -gGCGGGAAGC--GGUCccGCAGCCUGa -3'
miRNA:   3'- agCGCCUUUUGuuCUAGa-UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 91964 0.66 0.999956
Target:  5'- cCaCGGAGGACAAGcaa-ACGGCCUGg -3'
miRNA:   3'- aGcGCCUUUUGUUCuagaUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 99707 0.75 0.957751
Target:  5'- -gGCGGGAGugAGGAUCUuCAGgCUGa -3'
miRNA:   3'- agCGCCUUUugUUCUAGAuGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 127886 1.1 0.024416
Target:  5'- uUCGCGGAAAACAAGAUCUACAACCUGu -3'
miRNA:   3'- -AGCGCCUUUUGUUCUAGAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 90151 0.68 0.999713
Target:  5'- -aGCGGA--GCAGGAg--GCAGCCg- -3'
miRNA:   3'- agCGCCUuuUGUUCUagaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 34798 0.66 0.999956
Target:  5'- -aGUGGAgGAAUAGGGUaCUACAGCUg- -3'
miRNA:   3'- agCGCCU-UUUGUUCUA-GAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 150560 0.7 0.997681
Target:  5'- -gGCaGGAGAACAcgcGGAUCUGCuGGCCa- -3'
miRNA:   3'- agCG-CCUUUUGU---UCUAGAUG-UUGGac -5'
29101 3' -46.4 NC_006146.1 + 66263 0.71 0.992786
Target:  5'- -gGUGGggGGCAGGGUCUcGCGGguccuCCUGa -3'
miRNA:   3'- agCGCCuuUUGUUCUAGA-UGUU-----GGAC- -5'
29101 3' -46.4 NC_006146.1 + 58111 0.67 0.999936
Target:  5'- gCGCaacGGGAGGCAGGAgagcgugccucauuUUUACAugcGCCUGg -3'
miRNA:   3'- aGCG---CCUUUUGUUCU--------------AGAUGU---UGGAC- -5'
29101 3' -46.4 NC_006146.1 + 75064 0.66 0.999956
Target:  5'- cCGgGGccaguACAGGAUCUGgAGCCg- -3'
miRNA:   3'- aGCgCCuuu--UGUUCUAGAUgUUGGac -5'
29101 3' -46.4 NC_006146.1 + 43200 0.67 0.999897
Target:  5'- cUCGCGGGAGGCGGGGa-UGgGGCgCUGc -3'
miRNA:   3'- -AGCGCCUUUUGUUCUagAUgUUG-GAC- -5'
29101 3' -46.4 NC_006146.1 + 105873 0.67 0.999922
Target:  5'- cCG-GGGAGGCAAGAUa-GCGGCCa- -3'
miRNA:   3'- aGCgCCUUUUGUUCUAgaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 104053 0.69 0.999118
Target:  5'- aCGCuGGAG---GAGAUCUAUGACCUc -3'
miRNA:   3'- aGCG-CCUUuugUUCUAGAUGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 65081 0.69 0.999286
Target:  5'- gCGCGGG--GCAGGAggggcccuauUCUGCuGCCUa -3'
miRNA:   3'- aGCGCCUuuUGUUCU----------AGAUGuUGGAc -5'
29101 3' -46.4 NC_006146.1 + 114586 0.69 0.999286
Target:  5'- cUCGCGGc--GCAg---CUACGGCCUGg -3'
miRNA:   3'- -AGCGCCuuuUGUucuaGAUGUUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.