miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 3' -46.4 NC_006146.1 + 123409 0.66 0.999976
Target:  5'- cCGCGGcggccgAAGACcAGAUCgGCGAgCUGa -3'
miRNA:   3'- aGCGCC------UUUUGuUCUAGaUGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 124497 0.66 0.999967
Target:  5'- aCGCGGGAcucGGCcuGGUCU-CGGcCCUGg -3'
miRNA:   3'- aGCGCCUU---UUGuuCUAGAuGUU-GGAC- -5'
29101 3' -46.4 NC_006146.1 + 15129 0.67 0.999922
Target:  5'- -aGCGGcucuucugcGGCGGGGUCUACAGCUc- -3'
miRNA:   3'- agCGCCuu-------UUGUUCUAGAUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 64208 0.78 0.883968
Target:  5'- gUCGCGGAGcuccGGCAGGAggcacaUCUGC-GCCUGg -3'
miRNA:   3'- -AGCGCCUU----UUGUUCU------AGAUGuUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 83855 0.74 0.971609
Target:  5'- cUCGUGGAGGA-AGGAUUUuaACGGCCUGa -3'
miRNA:   3'- -AGCGCCUUUUgUUCUAGA--UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 14853 0.71 0.992785
Target:  5'- cCGCGGGAGGcCGAGGgg-GCAGCCa- -3'
miRNA:   3'- aGCGCCUUUU-GUUCUagaUGUUGGac -5'
29101 3' -46.4 NC_006146.1 + 11514 0.68 0.999775
Target:  5'- aUCGUGGAcAGCGcGGcCUGCGAgCUGg -3'
miRNA:   3'- -AGCGCCUuUUGUuCUaGAUGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 115698 0.68 0.999387
Target:  5'- -gGCGGccGACAGGAgacgCUcgcccgccgcggccGCAGCCUGg -3'
miRNA:   3'- agCGCCuuUUGUUCUa---GA--------------UGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 24811 0.69 0.999286
Target:  5'- gUGUGGAAAuACGAGAUCUuu-GCCUc -3'
miRNA:   3'- aGCGCCUUU-UGUUCUAGAuguUGGAc -5'
29101 3' -46.4 NC_006146.1 + 65081 0.69 0.999286
Target:  5'- gCGCGGG--GCAGGAggggcccuauUCUGCuGCCUa -3'
miRNA:   3'- aGCGCCUuuUGUUCU----------AGAUGuUGGAc -5'
29101 3' -46.4 NC_006146.1 + 114586 0.69 0.999286
Target:  5'- cUCGCGGc--GCAg---CUACGGCCUGg -3'
miRNA:   3'- -AGCGCCuuuUGUucuaGAUGUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 104053 0.69 0.999118
Target:  5'- aCGCuGGAG---GAGAUCUAUGACCUc -3'
miRNA:   3'- aGCG-CCUUuugUUCUAGAUGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 144560 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 147638 0.67 0.999825
Target:  5'- cUGCGGggGACAGGGUggACgGGgCUGg -3'
miRNA:   3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 120577 0.68 0.999775
Target:  5'- cCGCGGAugGCAAG-UUU--GACCUGg -3'
miRNA:   3'- aGCGCCUuuUGUUCuAGAugUUGGAC- -5'
29101 3' -46.4 NC_006146.1 + 43200 0.67 0.999897
Target:  5'- cUCGCGGGAGGCGGGGa-UGgGGCgCUGc -3'
miRNA:   3'- -AGCGCCUUUUGUUCUagAUgUUG-GAC- -5'
29101 3' -46.4 NC_006146.1 + 51179 0.7 0.998067
Target:  5'- gUGUGGAAG--GGGGUCUGCGGgCUGg -3'
miRNA:   3'- aGCGCCUUUugUUCUAGAUGUUgGAC- -5'
29101 3' -46.4 NC_006146.1 + 25004 0.7 0.997232
Target:  5'- -gGCGGAGGACAacgAGGUCUu---CCUGa -3'
miRNA:   3'- agCGCCUUUUGU---UCUAGAuguuGGAC- -5'
29101 3' -46.4 NC_006146.1 + 11913 0.7 0.997232
Target:  5'- aCGCGGuGGAGCAccuGGUCUuuGCGGCCUc -3'
miRNA:   3'- aGCGCC-UUUUGUu--CUAGA--UGUUGGAc -5'
29101 3' -46.4 NC_006146.1 + 61609 0.71 0.994659
Target:  5'- cCGCGGccGGGGcCGAGAUCccucccagcUACGACCUGa -3'
miRNA:   3'- aGCGCC--UUUU-GUUCUAG---------AUGUUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.