Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29101 | 3' | -46.4 | NC_006146.1 | + | 150715 | 0.67 | 0.999825 |
Target: 5'- cUGCGGggGACAGGGUggACgGGgCUGg -3' miRNA: 3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 147638 | 0.67 | 0.999825 |
Target: 5'- cUGCGGggGACAGGGUggACgGGgCUGg -3' miRNA: 3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 144560 | 0.67 | 0.999825 |
Target: 5'- cUGCGGggGACAGGGUggACgGGgCUGg -3' miRNA: 3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 51179 | 0.7 | 0.998067 |
Target: 5'- gUGUGGAAG--GGGGUCUGCGGgCUGg -3' miRNA: 3'- aGCGCCUUUugUUCUAGAUGUUgGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 142348 | 0.69 | 0.998918 |
Target: 5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3' miRNA: 3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 145426 | 0.69 | 0.998918 |
Target: 5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3' miRNA: 3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 148504 | 0.69 | 0.998918 |
Target: 5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3' miRNA: 3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 151582 | 0.69 | 0.998918 |
Target: 5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3' miRNA: 3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 154660 | 0.69 | 0.998918 |
Target: 5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3' miRNA: 3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 157737 | 0.69 | 0.998918 |
Target: 5'- -gGcCGGGcAGGCcGGGUCUugGGCCUGg -3' miRNA: 3'- agC-GCCU-UUUGuUCUAGAugUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 70748 | 0.69 | 0.9991 |
Target: 5'- cUCGCGGAcgccgccGAGaAGGAUCUuuuUGACCUGa -3' miRNA: 3'- -AGCGCCU-------UUUgUUCUAGAu--GUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 76903 | 0.69 | 0.999118 |
Target: 5'- aCGUGGGAGccagaggugaccGCGGGG-CUGCAGCCg- -3' miRNA: 3'- aGCGCCUUU------------UGUUCUaGAUGUUGGac -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 104053 | 0.69 | 0.999118 |
Target: 5'- aCGCuGGAG---GAGAUCUAUGACCUc -3' miRNA: 3'- aGCG-CCUUuugUUCUAGAUGUUGGAc -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 114586 | 0.69 | 0.999286 |
Target: 5'- cUCGCGGc--GCAg---CUACGGCCUGg -3' miRNA: 3'- -AGCGCCuuuUGUucuaGAUGUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 65081 | 0.69 | 0.999286 |
Target: 5'- gCGCGGG--GCAGGAggggcccuauUCUGCuGCCUa -3' miRNA: 3'- aGCGCCUuuUGUUCU----------AGAUGuUGGAc -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 24811 | 0.69 | 0.999286 |
Target: 5'- gUGUGGAAAuACGAGAUCUuu-GCCUc -3' miRNA: 3'- aGCGCCUUU-UGUUCUAGAuguUGGAc -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 115698 | 0.68 | 0.999387 |
Target: 5'- -gGCGGccGACAGGAgacgCUcgcccgccgcggccGCAGCCUGg -3' miRNA: 3'- agCGCCuuUUGUUCUa---GA--------------UGUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 11514 | 0.68 | 0.999775 |
Target: 5'- aUCGUGGAcAGCGcGGcCUGCGAgCUGg -3' miRNA: 3'- -AGCGCCUuUUGUuCUaGAUGUUgGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 120577 | 0.68 | 0.999775 |
Target: 5'- cCGCGGAugGCAAG-UUU--GACCUGg -3' miRNA: 3'- aGCGCCUuuUGUUCuAGAugUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 141482 | 0.67 | 0.999825 |
Target: 5'- cUGCGGggGACAGGGUggACgGGgCUGg -3' miRNA: 3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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