Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29101 | 3' | -46.4 | NC_006146.1 | + | 156871 | 0.67 | 0.999825 |
Target: 5'- cUGCGGggGACAGGGUggACgGGgCUGg -3' miRNA: 3'- aGCGCCuuUUGUUCUAgaUG-UUgGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 132341 | 0.67 | 0.999869 |
Target: 5'- cUCGUGGAugucacuaaggaacuGGACGGGGUcCUGCGucuccacggccuaaACCUGg -3' miRNA: 3'- -AGCGCCU---------------UUUGUUCUA-GAUGU--------------UGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 21041 | 0.67 | 0.999897 |
Target: 5'- uUCuCGGAGGGCGAGAcgCUGCGcuucGCCg- -3' miRNA: 3'- -AGcGCCUUUUGUUCUa-GAUGU----UGGac -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 43200 | 0.67 | 0.999897 |
Target: 5'- cUCGCGGGAGGCGGGGa-UGgGGCgCUGc -3' miRNA: 3'- -AGCGCCUUUUGUUCUagAUgUUG-GAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 105873 | 0.67 | 0.999922 |
Target: 5'- cCG-GGGAGGCAAGAUa-GCGGCCa- -3' miRNA: 3'- aGCgCCUUUUGUUCUAgaUGUUGGac -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 142208 | 0.67 | 0.999922 |
Target: 5'- -aGCGGAGAcCAGGAgg-AC-GCCUGg -3' miRNA: 3'- agCGCCUUUuGUUCUagaUGuUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 151218 | 0.7 | 0.997681 |
Target: 5'- aCGCaGGAGAuuuGCAGGAUCagguCAGCCUc -3' miRNA: 3'- aGCG-CCUUU---UGUUCUAGau--GUUGGAc -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 94954 | 0.7 | 0.997681 |
Target: 5'- cUGCGGuAGAGgGGGGUgUGCAGCCa- -3' miRNA: 3'- aGCGCC-UUUUgUUCUAgAUGUUGGac -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 58971 | 0.7 | 0.998067 |
Target: 5'- cUCGaGGGAGACGGuGGccacCUGCAACCUGg -3' miRNA: 3'- -AGCgCCUUUUGUU-CUa---GAUGUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 52000 | 0.7 | 0.998067 |
Target: 5'- gCGCGuuucggacgagaGAGAGCGAGAgggCaGCGGCCUGa -3' miRNA: 3'- aGCGC------------CUUUUGUUCUa--GaUGUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 38806 | 0.69 | 0.998679 |
Target: 5'- cUGCGGGGuGCAc-AUCUGCAGCCa- -3' miRNA: 3'- aGCGCCUUuUGUucUAGAUGUUGGac -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 74925 | 0.69 | 0.999118 |
Target: 5'- -gGCaGu--ACAGGAUCUGgAACCUGg -3' miRNA: 3'- agCGcCuuuUGUUCUAGAUgUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 150560 | 0.7 | 0.997681 |
Target: 5'- -gGCaGGAGAACAcgcGGAUCUGCuGGCCa- -3' miRNA: 3'- agCG-CCUUUUGU---UCUAGAUG-UUGGac -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 35906 | 0.71 | 0.994981 |
Target: 5'- aUGCGGGacagucacguucaugGAACgAGGGUCUGCAuCCUGu -3' miRNA: 3'- aGCGCCU---------------UUUG-UUCUAGAUGUuGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 162546 | 0.71 | 0.993395 |
Target: 5'- aCGCGGAAGACGGGGgggacggugguccCUAuCAGCCUc -3' miRNA: 3'- aGCGCCUUUUGUUCUa------------GAU-GUUGGAc -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 66263 | 0.71 | 0.992786 |
Target: 5'- -gGUGGggGGCAGGGUCUcGCGGguccuCCUGa -3' miRNA: 3'- agCGCCuuUUGUUCUAGA-UGUU-----GGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 156531 | 0.72 | 0.98749 |
Target: 5'- -aGCGGGAGGCGAGAUCccGgGACCc- -3' miRNA: 3'- agCGCCUUUUGUUCUAGa-UgUUGGac -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 158782 | 0.73 | 0.985786 |
Target: 5'- -gGCGGGAAGC--GGUCccGCAGCCUGa -3' miRNA: 3'- agCGCCUUUUGuuCUAGa-UGUUGGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 99707 | 0.75 | 0.957751 |
Target: 5'- -gGCGGGAGugAGGAUCUuCAGgCUGa -3' miRNA: 3'- agCGCCUUUugUUCUAGAuGUUgGAC- -5' |
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29101 | 3' | -46.4 | NC_006146.1 | + | 129931 | 0.66 | 0.999967 |
Target: 5'- gCGCGGcaccACGGcGGUCUACGgcacggACCUGg -3' miRNA: 3'- aGCGCCuuu-UGUU-CUAGAUGU------UGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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