miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 5' -58.5 NC_006146.1 + 122160 0.65 0.848247
Target:  5'- gGCCGGGCgcaaggagaaggaGCUGCUgCGCGAGCgggaggCCa- -3'
miRNA:   3'- -CGGCCCGa------------CGACGG-GUGUUUGa-----GGcg -5'
29101 5' -58.5 NC_006146.1 + 21067 0.66 0.843542
Target:  5'- cGCCGaGGCccugGCcGCCCACAccAC-CCGg -3'
miRNA:   3'- -CGGC-CCGa---CGaCGGGUGUu-UGaGGCg -5'
29101 5' -58.5 NC_006146.1 + 95139 0.66 0.843542
Target:  5'- cCUGGGCUug-GUCCGCcuGAACUCgGCg -3'
miRNA:   3'- cGGCCCGAcgaCGGGUG--UUUGAGgCG- -5'
29101 5' -58.5 NC_006146.1 + 33543 0.66 0.843542
Target:  5'- uGCCcGGCuUGCcugGCCCugGuGCUCCu- -3'
miRNA:   3'- -CGGcCCG-ACGa--CGGGugUuUGAGGcg -5'
29101 5' -58.5 NC_006146.1 + 46911 0.66 0.843542
Target:  5'- gGCCGGGUUGaggggGUCgCACGggGACUCgGUc -3'
miRNA:   3'- -CGGCCCGACga---CGG-GUGU--UUGAGgCG- -5'
29101 5' -58.5 NC_006146.1 + 128870 0.66 0.843542
Target:  5'- gGCCacgaagaggGGGCggagGCggGCCCgaacGCGGGCUUCGUg -3'
miRNA:   3'- -CGG---------CCCGa---CGa-CGGG----UGUUUGAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 113687 0.66 0.843542
Target:  5'- cCCGGGCccgGCcuccgGCCCGgGGACggCgGCg -3'
miRNA:   3'- cGGCCCGa--CGa----CGGGUgUUUGa-GgCG- -5'
29101 5' -58.5 NC_006146.1 + 167525 0.66 0.843542
Target:  5'- cGCCGGGCcGC-GCCCcCGGccccuCUCCu- -3'
miRNA:   3'- -CGGCCCGaCGaCGGGuGUUu----GAGGcg -5'
29101 5' -58.5 NC_006146.1 + 169389 0.66 0.843542
Target:  5'- cGCCGGGCcGC-GCCCcCGGccccuCUCCu- -3'
miRNA:   3'- -CGGCCCGaCGaCGGGuGUUu----GAGGcg -5'
29101 5' -58.5 NC_006146.1 + 170320 0.66 0.843542
Target:  5'- cGCCGGGCcGC-GCCCcCGGccccuCUCCu- -3'
miRNA:   3'- -CGGCCCGaCGaCGGGuGUUu----GAGGcg -5'
29101 5' -58.5 NC_006146.1 + 168457 0.66 0.843542
Target:  5'- cGCCGGGCcGC-GCCCcCGGccccuCUCCu- -3'
miRNA:   3'- -CGGCCCGaCGaCGGGuGUUu----GAGGcg -5'
29101 5' -58.5 NC_006146.1 + 61842 0.66 0.843542
Target:  5'- aGUgGGGCUGgUGCCgG--GACUCCcgggGCa -3'
miRNA:   3'- -CGgCCCGACgACGGgUguUUGAGG----CG- -5'
29101 5' -58.5 NC_006146.1 + 102884 0.66 0.842752
Target:  5'- gGCCGGGCcccaguuUGC-GCUUACGGAcCUCCu- -3'
miRNA:   3'- -CGGCCCG-------ACGaCGGGUGUUU-GAGGcg -5'
29101 5' -58.5 NC_006146.1 + 25533 0.66 0.835555
Target:  5'- cGCUGGGaugGagaGUCCACAGACaUUCGCu -3'
miRNA:   3'- -CGGCCCga-Cga-CGGGUGUUUG-AGGCG- -5'
29101 5' -58.5 NC_006146.1 + 132778 0.66 0.835555
Target:  5'- cGCaCGGucGCUGCagGCUCGCAGcuGCUCaGCa -3'
miRNA:   3'- -CG-GCC--CGACGa-CGGGUGUU--UGAGgCG- -5'
29101 5' -58.5 NC_006146.1 + 137601 0.66 0.835555
Target:  5'- gGCCGGGggccgGgUGCCC-CuGGgUCCGCu -3'
miRNA:   3'- -CGGCCCga---CgACGGGuGuUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 137531 0.66 0.835555
Target:  5'- aGCgGGGCaGCgGCCCgGCGGACccaCCGg -3'
miRNA:   3'- -CGgCCCGaCGaCGGG-UGUUUGa--GGCg -5'
29101 5' -58.5 NC_006146.1 + 120538 0.66 0.834747
Target:  5'- cGgCGGGaCUGCUGgCCAagaucccCAGGCUggccgaggCCGCg -3'
miRNA:   3'- -CgGCCC-GACGACgGGU-------GUUUGA--------GGCG- -5'
29101 5' -58.5 NC_006146.1 + 46131 0.66 0.833124
Target:  5'- cCCGGGCccuggccgUGCUcugauuguggaccaGcCCCAgGAACUCCGg -3'
miRNA:   3'- cGGCCCG--------ACGA--------------C-GGGUgUUUGAGGCg -5'
29101 5' -58.5 NC_006146.1 + 145813 0.66 0.830677
Target:  5'- aCCGGGUguugggaccuggugGC-GCCCGCcGGCUCCa- -3'
miRNA:   3'- cGGCCCGa-------------CGaCGGGUGuUUGAGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.