miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29101 5' -58.5 NC_006146.1 + 127921 1.14 0.000863
Target:  5'- cGCCGGGCUGCUGCCCACAAACUCCGCg -3'
miRNA:   3'- -CGGCCCGACGACGGGUGUUUGAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 135701 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 135886 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 170320 0.66 0.843542
Target:  5'- cGCCGGGCcGC-GCCCcCGGccccuCUCCu- -3'
miRNA:   3'- -CGGCCCGaCGaCGGGuGUUu----GAGGcg -5'
29101 5' -58.5 NC_006146.1 + 55706 0.77 0.265039
Target:  5'- cGCCGGGggGCucUGCCCGCcgcuGGcCUCCGCg -3'
miRNA:   3'- -CGGCCCgaCG--ACGGGUGu---UU-GAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 81178 0.75 0.323064
Target:  5'- cGUCGGGCUGUcgUGUCCACAggcgaggucaguggGACUuuGCc -3'
miRNA:   3'- -CGGCCCGACG--ACGGGUGU--------------UUGAggCG- -5'
29101 5' -58.5 NC_006146.1 + 152252 0.74 0.410067
Target:  5'- gGCCGGGCaugcgaucccugGCUGCCUGgAGuGCUCUGCu -3'
miRNA:   3'- -CGGCCCGa-----------CGACGGGUgUU-UGAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 156923 0.74 0.411763
Target:  5'- gGCCuGGGUgGCggcGCUgACGGGCUCCGCu -3'
miRNA:   3'- -CGG-CCCGaCGa--CGGgUGUUUGAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 135143 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 135608 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 135329 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 56689 0.73 0.428962
Target:  5'- cGCCGGGCUGCUaCCCc----CUCCGg -3'
miRNA:   3'- -CGGCCCGACGAcGGGuguuuGAGGCg -5'
29101 5' -58.5 NC_006146.1 + 33131 0.81 0.15185
Target:  5'- cGCCGGGCcGCUGCCC-C--GCUCCGg -3'
miRNA:   3'- -CGGCCCGaCGACGGGuGuuUGAGGCg -5'
29101 5' -58.5 NC_006146.1 + 135422 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 33255 0.81 0.15185
Target:  5'- cGCCGGGCcGCUGCCC-C--GCUCCGg -3'
miRNA:   3'- -CGGCCCGaCGACGGGuGuuUGAGGCg -5'
29101 5' -58.5 NC_006146.1 + 131218 0.73 0.420309
Target:  5'- -gCGGcGCUGCagGCCCAgGAGC-CCGCc -3'
miRNA:   3'- cgGCC-CGACGa-CGGGUgUUUGaGGCG- -5'
29101 5' -58.5 NC_006146.1 + 135515 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 135793 0.73 0.428962
Target:  5'- gGCCGGGCcGCUGCC----GGgUCCGCu -3'
miRNA:   3'- -CGGCCCGaCGACGGguguUUgAGGCG- -5'
29101 5' -58.5 NC_006146.1 + 33377 0.81 0.15185
Target:  5'- cGCCGGGCcGCUGCCC-C--GCUCCGg -3'
miRNA:   3'- -CGGCCCGaCGACGGGuGuuUGAGGCg -5'
29101 5' -58.5 NC_006146.1 + 75765 0.75 0.355065
Target:  5'- cGCCGGGCUucgGUUGgCCACAggAACuUCUGCu -3'
miRNA:   3'- -CGGCCCGA---CGACgGGUGU--UUG-AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.