miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 3' -56.1 NC_006146.1 + 75786 0.66 0.906389
Target:  5'- --aGGg-GGCUCUaCUCgggcgUCUCGGGCg -3'
miRNA:   3'- aagCCagUCGAGA-GAGaa---AGGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 49697 0.66 0.89947
Target:  5'- --gGGUCGGggCUUUCUUUCUuugcaguCGGGCc -3'
miRNA:   3'- aagCCAGUCgaGAGAGAAAGG-------GCCCG- -5'
29102 3' -56.1 NC_006146.1 + 145007 0.67 0.886862
Target:  5'- --aGGUgGGCagggaggagCUCUCcaccacaaugUUCCCGGGCa -3'
miRNA:   3'- aagCCAgUCGa--------GAGAGa---------AAGGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 46301 0.67 0.879899
Target:  5'- -gCGGUCgAGCUCgagcccCUCUUccUCucggCCGGGCu -3'
miRNA:   3'- aaGCCAG-UCGAGa-----GAGAA--AG----GGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 106651 0.67 0.87919
Target:  5'- -gCGGcCGGCUggucagggccgucCUCUC---CCCGGGCa -3'
miRNA:   3'- aaGCCaGUCGA-------------GAGAGaaaGGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 154888 0.67 0.872715
Target:  5'- gUCGGggggCAGggC-CUCg--CCCGGGCu -3'
miRNA:   3'- aAGCCa---GUCgaGaGAGaaaGGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 40201 0.67 0.853047
Target:  5'- cUCGG---GCUCUCUCUUUCUCuuguuggcacgcgagGGGCc -3'
miRNA:   3'- aAGCCaguCGAGAGAGAAAGGG---------------CCCG- -5'
29102 3' -56.1 NC_006146.1 + 145721 0.68 0.816754
Target:  5'- -gCGcGUCAGCUUgaugucgCUCUgg-CCGGGCa -3'
miRNA:   3'- aaGC-CAGUCGAGa------GAGAaagGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 118071 0.68 0.816753
Target:  5'- -gCGG-CGGCUCggccCUCcgcaUCCUGGGCa -3'
miRNA:   3'- aaGCCaGUCGAGa---GAGaa--AGGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 41243 0.69 0.790113
Target:  5'- --aGGcgaaAGCgCUCUCgccaUUCCCGGGCg -3'
miRNA:   3'- aagCCag--UCGaGAGAGa---AAGGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 95673 0.69 0.790113
Target:  5'- cUCGGUCAGg-CUCUUUgagaUCCUgcaGGGCa -3'
miRNA:   3'- aAGCCAGUCgaGAGAGAa---AGGG---CCCG- -5'
29102 3' -56.1 NC_006146.1 + 35004 0.7 0.733242
Target:  5'- aUUUGGUCAGCUgacCgaugCUCgccacgCCCGGGUc -3'
miRNA:   3'- -AAGCCAGUCGA---Ga---GAGaaa---GGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 138834 0.7 0.733242
Target:  5'- aUUUGGUCAGCUgacCgaugCUCgccacgCCCGGGUc -3'
miRNA:   3'- -AAGCCAGUCGA---Ga---GAGaaa---GGGCCCG- -5'
29102 3' -56.1 NC_006146.1 + 128304 1.09 0.003001
Target:  5'- cUUCGGUCAGCUCUCUCUUUCCCGGGCu -3'
miRNA:   3'- -AAGCCAGUCGAGAGAGAAAGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.