miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 153892 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150814 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 147736 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 144659 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 141581 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 108620 0.66 0.851062
Target:  5'- gGGUCCgcggaggcGGuGGUGAAGgaGAUGGACu -3'
miRNA:   3'- aCCGGGa-------CCuCUACUUCggCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150668 0.66 0.851062
Target:  5'- gUGGCCggGGAGGggugggGAguGGCCaGGgGGACg -3'
miRNA:   3'- -ACCGGgaCCUCUa-----CU--UCGG-CUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 156970 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 101574 0.66 0.851062
Target:  5'- gUGGagCUGGAGuUGGAGCCaacGACGaGGCc -3'
miRNA:   3'- -ACCggGACCUCuACUUCGG---CUGC-CUG- -5'
29102 5' -58.3 NC_006146.1 + 51937 0.66 0.850286
Target:  5'- cGGCCCcGGugcGGucugcgcgccaacUGgcGCCGACGGGg -3'
miRNA:   3'- aCCGGGaCCu--CU-------------ACuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 40466 0.66 0.850286
Target:  5'- aUGG-CCUGGuGGGUGAaggggggcagaggGGCCGcgaaaggcaGCGGACu -3'
miRNA:   3'- -ACCgGGACC-UCUACU-------------UCGGC---------UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 40029 0.66 0.846378
Target:  5'- gGGCCUgcugGGGGccGuAGCCGACuccggcguguccguaGGACa -3'
miRNA:   3'- aCCGGGa---CCUCuaCuUCGGCUG---------------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 40994 0.66 0.845591
Target:  5'- cUGGCCCUGucuggucagggcgaaGAGccGGgcgucagAGCCGugGGAg -3'
miRNA:   3'- -ACCGGGAC---------------CUCuaCU-------UCGGCugCCUg -5'
29102 5' -58.3 NC_006146.1 + 156866 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 153788 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 150710 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 147633 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 144555 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 141477 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 103607 0.66 0.843218
Target:  5'- gUGGCCCg------GGAGCUGGCGGAg -3'
miRNA:   3'- -ACCGGGaccucuaCUUCGGCUGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.