miRNA display CGI


Results 61 - 80 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 112730 0.66 0.810064
Target:  5'- aGGCCCguguacaGGcAGGUGGucgaggcgcagaAGCCGGCcaGGGCa -3'
miRNA:   3'- aCCGGGa------CC-UCUACU------------UCGGCUG--CCUG- -5'
29102 5' -58.3 NC_006146.1 + 142324 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 153838 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 92301 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 19713 0.67 0.801368
Target:  5'- cUGGUCCacgGGGGAgGAGGCCGGCc--- -3'
miRNA:   3'- -ACCGGGa--CCUCUaCUUCGGCUGccug -5'
29102 5' -58.3 NC_006146.1 + 66485 0.67 0.801368
Target:  5'- gGGCa-UGGGGAggcUGguGCUGACGGAUu -3'
miRNA:   3'- aCCGggACCUCU---ACuuCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150760 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 144605 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 141527 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 128420 0.67 0.783539
Target:  5'- cGGCCaggGGAgGGUGAuccgGGCCGcagacCGGGCg -3'
miRNA:   3'- aCCGGga-CCU-CUACU----UCGGCu----GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 33213 0.67 0.774424
Target:  5'- aGGCC--GGAGggGGAGCCGGgaugGGGCu -3'
miRNA:   3'- aCCGGgaCCUCuaCUUCGGCUg---CCUG- -5'
29102 5' -58.3 NC_006146.1 + 129563 0.67 0.774424
Target:  5'- aGGCCCUGGgccAGAuagguUGggGCgCGAaacagggagGGACg -3'
miRNA:   3'- aCCGGGACC---UCU-----ACuuCG-GCUg--------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 156916 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 92271 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92211 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92181 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 39868 0.67 0.792523
Target:  5'- gUGuGCCCgggGGAGGaggcUGAGGCUGAgCGGcCu -3'
miRNA:   3'- -AC-CGGGa--CCUCU----ACUUCGGCU-GCCuG- -5'
29102 5' -58.3 NC_006146.1 + 92121 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92032 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 14157 0.67 0.800489
Target:  5'- cUGGCCgUGGAGcUGAGcgucugcGCCaGGCuGGACc -3'
miRNA:   3'- -ACCGGgACCUCuACUU-------CGG-CUG-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.