miRNA display CGI


Results 101 - 120 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 92032 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92121 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 39665 0.67 0.755835
Target:  5'- -uGCCUUGGccuUGGAGgCGGCGGGCu -3'
miRNA:   3'- acCGGGACCucuACUUCgGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 121204 0.67 0.755835
Target:  5'- gUGGcCCCUGGAGA--GGGUgGAggaGGACg -3'
miRNA:   3'- -ACC-GGGACCUCUacUUCGgCUg--CCUG- -5'
29102 5' -58.3 NC_006146.1 + 66485 0.67 0.801368
Target:  5'- gGGCa-UGGGGAggcUGguGCUGACGGAUu -3'
miRNA:   3'- aCCGggACCUCU---ACuuCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92151 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92181 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92211 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92271 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92301 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 100267 0.67 0.759589
Target:  5'- cGGCUCUGGugggggcaauggggcGGAggcagcaGAGGCCGugGaGGCa -3'
miRNA:   3'- aCCGGGACC---------------UCUa------CUUCGGCugC-CUG- -5'
29102 5' -58.3 NC_006146.1 + 59247 0.68 0.746378
Target:  5'- aUGGCCCggaucUGaGAGAUGAGGUauagGAUGGGg -3'
miRNA:   3'- -ACCGGG-----AC-CUCUACUUCGg---CUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 135728 0.68 0.736824
Target:  5'- -cGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- acCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 153520 0.68 0.746378
Target:  5'- aGGCUgUGGAugGAgugGggGgCGugGGGCu -3'
miRNA:   3'- aCCGGgACCU--CUa--CuuCgGCugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 48222 0.68 0.726214
Target:  5'- aGGgCCUGGcgcgccuGGGUGAGcGCCGcGCGGAg -3'
miRNA:   3'- aCCgGGACC-------UCUACUU-CGGC-UGCCUg -5'
29102 5' -58.3 NC_006146.1 + 130717 0.68 0.707671
Target:  5'- aGaGCCCgaGGAGGacgaGGAGgCGGCGGGCu -3'
miRNA:   3'- aC-CGGGa-CCUCUa---CUUCgGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 2468 0.68 0.697819
Target:  5'- gGGUCuUUGGcGGUGuGGCCGGCGGGg -3'
miRNA:   3'- aCCGG-GACCuCUACuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 12855 0.68 0.727183
Target:  5'- aGGCgCCUGGGGc-GAGGCUGGguggcUGGGCa -3'
miRNA:   3'- aCCG-GGACCUCuaCUUCGGCU-----GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 65840 0.68 0.746378
Target:  5'- gGGCCagUGGuGAUGugguGCCGucccaGCGGACu -3'
miRNA:   3'- aCCGGg-ACCuCUACuu--CGGC-----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 42337 0.68 0.746378
Target:  5'- cUGGCCCgGGAGGUcagugucuGAGCCG--GGACg -3'
miRNA:   3'- -ACCGGGaCCUCUAc-------UUCGGCugCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.