miRNA display CGI


Results 61 - 80 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 14794 0.72 0.47185
Target:  5'- cGGCUgaGGGGAaggaGAGGCCGGcCGGGCc -3'
miRNA:   3'- aCCGGgaCCUCUa---CUUCGGCU-GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 107974 0.72 0.490452
Target:  5'- gGGCCCUGGAGAccacaGAcagGGCaaaGACGGuGCa -3'
miRNA:   3'- aCCGGGACCUCUa----CU---UCGg--CUGCC-UG- -5'
29102 5' -58.3 NC_006146.1 + 139078 0.72 0.47185
Target:  5'- gGGCCCUGGuGGcgcggGggGCUGuaacucaguGCGGACu -3'
miRNA:   3'- aCCGGGACCuCUa----CuuCGGC---------UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 1500 0.71 0.528622
Target:  5'- gUGGCCUcccaGGAGA-GggGCCGG-GGGCg -3'
miRNA:   3'- -ACCGGGa---CCUCUaCuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 118301 0.71 0.556968
Target:  5'- aUGGCCCagcugacGGAcgugcccagcucGGUGAcgcugagGGCCGGCGGGCg -3'
miRNA:   3'- -ACCGGGa------CCU------------CUACU-------UCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 3364 0.71 0.528622
Target:  5'- gUGGCCUcccaGGAGA-GggGCCGG-GGGCg -3'
miRNA:   3'- -ACCGGGa---CCUCUaCuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 2432 0.71 0.528622
Target:  5'- gUGGCCUcccaGGAGA-GggGCCGG-GGGCg -3'
miRNA:   3'- -ACCGGGa---CCUCUaCuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 569 0.71 0.528622
Target:  5'- gUGGCCUcccaGGAGA-GggGCCGG-GGGCg -3'
miRNA:   3'- -ACCGGGa---CCUCUaCuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 127575 0.71 0.557953
Target:  5'- cUGGCCCUGGgcGGccGAGGCCGcgcCGGcCg -3'
miRNA:   3'- -ACCGGGACC--UCuaCUUCGGCu--GCCuG- -5'
29102 5' -58.3 NC_006146.1 + 14843 0.71 0.567837
Target:  5'- gGGCCC-GGGGccgcggGAGGCCGAgGGGg -3'
miRNA:   3'- aCCGGGaCCUCua----CUUCGGCUgCCUg -5'
29102 5' -58.3 NC_006146.1 + 119255 0.71 0.574781
Target:  5'- cGGCCCUGGcccccugggaguccAGAgccUGGAGCacACGGACg -3'
miRNA:   3'- aCCGGGACC--------------UCU---ACUUCGgcUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 124518 0.71 0.557953
Target:  5'- cGGCCCUGGcGAgggacgGggGCCuGGgGGAg -3'
miRNA:   3'- aCCGGGACCuCUa-----CuuCGG-CUgCCUg -5'
29102 5' -58.3 NC_006146.1 + 44754 0.71 0.548119
Target:  5'- cGGCUgUGGuuGUcGggGcCCGGCGGGCg -3'
miRNA:   3'- aCCGGgACCucUA-CuuC-GGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 156922 0.71 0.557953
Target:  5'- aGGCCUgGGuGgcGgcGCUGACGGGCu -3'
miRNA:   3'- aCCGGGaCCuCuaCuuCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 74733 0.71 0.537366
Target:  5'- aGGCCCUGGAGGgacccagUGAgccAGCCucCGGGg -3'
miRNA:   3'- aCCGGGACCUCU-------ACU---UCGGcuGCCUg -5'
29102 5' -58.3 NC_006146.1 + 93711 0.71 0.548119
Target:  5'- aGGCCgUGGAGAcGAGGCUcauCGGAg -3'
miRNA:   3'- aCCGGgACCUCUaCUUCGGcu-GCCUg -5'
29102 5' -58.3 NC_006146.1 + 137586 0.71 0.567837
Target:  5'- cGGUCCUGGAGcucGGGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCuacUUCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 33096 0.71 0.527654
Target:  5'- cGGCUCUGGggcagccGGGUGGccGCCGGCGGGu -3'
miRNA:   3'- aCCGGGACC-------UCUACUu-CGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 49977 0.7 0.627828
Target:  5'- aUGGUCCucuUGGAGAaaucaaaGAGGCCGuCGGAg -3'
miRNA:   3'- -ACCGGG---ACCUCUa------CUUCGGCuGCCUg -5'
29102 5' -58.3 NC_006146.1 + 77974 0.7 0.597723
Target:  5'- gUGGCCUUGGAGGU---GCCGGuccucucugucUGGACa -3'
miRNA:   3'- -ACCGGGACCUCUAcuuCGGCU-----------GCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.