miRNA display CGI


Results 41 - 60 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 135820 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136842 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 116907 0.75 0.345397
Target:  5'- cGGCCCUGaGGGA--AAGCCGGgGGAUc -3'
miRNA:   3'- aCCGGGAC-CUCUacUUCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 71869 0.74 0.375051
Target:  5'- gGGCCCUGGGGGgccucuacacGGCCGucacGCGGACc -3'
miRNA:   3'- aCCGGGACCUCUacu-------UCGGC----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 101666 0.74 0.376659
Target:  5'- cUGGCCCUGGGGG-GAaacgGGCU-ACGGGCg -3'
miRNA:   3'- -ACCGGGACCUCUaCU----UCGGcUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 46218 0.74 0.384767
Target:  5'- aGGCuuCCUGGAGGaaaaUGAAGCCGGagggaGGGCc -3'
miRNA:   3'- aCCG--GGACCUCU----ACUUCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 153058 0.74 0.392989
Target:  5'- aGGUCUUGGugucguuGAUGAAGCUGAaGGACa -3'
miRNA:   3'- aCCGGGACCu------CUACUUCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 131819 0.74 0.401325
Target:  5'- aUGGCCCUGGccuuccccAGAccgGAGGCCGGC-GACc -3'
miRNA:   3'- -ACCGGGACC--------UCUa--CUUCGGCUGcCUG- -5'
29102 5' -58.3 NC_006146.1 + 8059 0.74 0.409772
Target:  5'- cGGCCCUGGGGGUGucuGGCaaaaacuUGGACu -3'
miRNA:   3'- aCCGGGACCUCUACu--UCGgcu----GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 46608 0.74 0.409772
Target:  5'- cUGGCCCUGGAagagccuguuGAUGucccGGCCGuucCGGAUg -3'
miRNA:   3'- -ACCGGGACCU----------CUACu---UCGGCu--GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 14548 0.73 0.41833
Target:  5'- gGGCCCUGGAGcUGcuGGGCCGcuuuCGGGg -3'
miRNA:   3'- aCCGGGACCUCuAC--UUCGGCu---GCCUg -5'
29102 5' -58.3 NC_006146.1 + 168201 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 169133 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 170065 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 167269 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 41057 0.73 0.421783
Target:  5'- cGGCCCUGGGGGccucgggguggaggGAGGCC-AgGGACa -3'
miRNA:   3'- aCCGGGACCUCUa-------------CUUCGGcUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 162362 0.73 0.435765
Target:  5'- aGcGCCUUGGAGAUGGAGCCccuuGGCGcGCc -3'
miRNA:   3'- aC-CGGGACCUCUACUUCGG----CUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 14794 0.72 0.47185
Target:  5'- cGGCUgaGGGGAaggaGAGGCCGGcCGGGCc -3'
miRNA:   3'- aCCGGgaCCUCUa---CUUCGGCU-GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 139078 0.72 0.47185
Target:  5'- gGGCCCUGGuGGcgcggGggGCUGuaacucaguGCGGACu -3'
miRNA:   3'- aCCGGGACCuCUa----CuuCGGC---------UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 71773 0.72 0.481107
Target:  5'- gGaGCCCcugUGGAGAcgccUGAGGCCGGaGGGCa -3'
miRNA:   3'- aC-CGGG---ACCUCU----ACUUCGGCUgCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.