miRNA display CGI


Results 81 - 100 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 77974 0.7 0.597723
Target:  5'- gUGGCCUUGGAGGU---GCCGGuccucucugucUGGACa -3'
miRNA:   3'- -ACCGGGACCUCUAcuuCGGCU-----------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 68882 0.7 0.597723
Target:  5'- cUGGCCCugaUGGAGAUGGAGaagguggccaCCGcgcucaaaAUGGACg -3'
miRNA:   3'- -ACCGGG---ACCUCUACUUC----------GGC--------UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 167169 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 169033 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 73391 0.7 0.607743
Target:  5'- gGGCCUucacgugGGAGcgGAGGUCG-CGGAUg -3'
miRNA:   3'- aCCGGGa------CCUCuaCUUCGGCuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 169965 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 168101 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 49977 0.7 0.627828
Target:  5'- aUGGUCCucuUGGAGAaaucaaaGAGGCCGuCGGAg -3'
miRNA:   3'- -ACCGGG---ACCUCUa------CUUCGGCuGCCUg -5'
29102 5' -58.3 NC_006146.1 + 160107 0.7 0.627828
Target:  5'- cGGCCUcuagUGGAGGauagagUGAauGGgCGGCGGACu -3'
miRNA:   3'- aCCGGG----ACCUCU------ACU--UCgGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 60467 0.7 0.627828
Target:  5'- aGGCCgCggGGAGcgGUGAgaGGCCGGgGGGCc -3'
miRNA:   3'- aCCGG-Ga-CCUC--UACU--UCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 141940 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 145018 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 148096 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 151174 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 154252 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 157330 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150859 0.69 0.647926
Target:  5'- -uGUCaaUGGGGAUGAGGCCGgugauGCGGACc -3'
miRNA:   3'- acCGGg-ACCUCUACUUCGGC-----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 45059 0.69 0.647926
Target:  5'- gGGCCUUGGGcuuGAUGA--CCGGuCGGACu -3'
miRNA:   3'- aCCGGGACCU---CUACUucGGCU-GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 44689 0.69 0.667975
Target:  5'- gGGCCC-GGAGAgGAGGacgaUGAgGGACu -3'
miRNA:   3'- aCCGGGaCCUCUaCUUCg---GCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 23470 0.69 0.677962
Target:  5'- aGGCCCUGGccGUGGccagguacgGGCUGGUGGGCu -3'
miRNA:   3'- aCCGGGACCucUACU---------UCGGCUGCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.