Results 21 - 40 of 249 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29102 | 5' | -58.3 | NC_006146.1 | + | 153788 | 0.66 | 0.843218 |
Target: 5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3' miRNA: 3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 150710 | 0.66 | 0.843218 |
Target: 5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3' miRNA: 3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 147633 | 0.66 | 0.843218 |
Target: 5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3' miRNA: 3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 144555 | 0.66 | 0.843218 |
Target: 5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3' miRNA: 3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 141477 | 0.66 | 0.843218 |
Target: 5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3' miRNA: 3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 61316 | 0.66 | 0.843218 |
Target: 5'- cGGCguCCUGcccGGGUGGccuAGCCGGCGaGGCa -3' miRNA: 3'- aCCG--GGACc--UCUACU---UCGGCUGC-CUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 44625 | 0.66 | 0.843218 |
Target: 5'- aUGGCCaUGG-GGUGGAGCUGGaGaGGCg -3' miRNA: 3'- -ACCGGgACCuCUACUUCGGCUgC-CUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 84840 | 0.66 | 0.840829 |
Target: 5'- -uGCCCcuugauccagaagcUGGAGG---AGCCGACGGAg -3' miRNA: 3'- acCGGG--------------ACCUCUacuUCGGCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 40742 | 0.66 | 0.835189 |
Target: 5'- gGGCCCgugcuUGGGGcu--GGCC-ACGGACg -3' miRNA: 3'- aCCGGG-----ACCUCuacuUCGGcUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 114961 | 0.66 | 0.835189 |
Target: 5'- aGuGCCCUGGAG--GAGGCagaGA-GGGCg -3' miRNA: 3'- aC-CGGGACCUCuaCUUCGg--CUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 51573 | 0.66 | 0.835189 |
Target: 5'- gGGCgCCgccgGGAGGggcccgggGGAGCCaGAgGGGCc -3' miRNA: 3'- aCCG-GGa---CCUCUa-------CUUCGG-CUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 44761 | 0.66 | 0.835189 |
Target: 5'- gGGCUCUcgGGGGAgagGguGCCGugcCGGGCu -3' miRNA: 3'- aCCGGGA--CCUCUa--CuuCGGCu--GCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 12792 | 0.66 | 0.835189 |
Target: 5'- cGGCCCUGcAGggGcGGaCGuACGGACg -3' miRNA: 3'- aCCGGGACcUCuaCuUCgGC-UGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 54837 | 0.66 | 0.834377 |
Target: 5'- gGGCCaaauCUGGAacucGAUGAaggcGGCCGggaaaaaugggcuGCGGGCg -3' miRNA: 3'- aCCGG----GACCU----CUACU----UCGGC-------------UGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 10227 | 0.66 | 0.826983 |
Target: 5'- cGGCCCUGGucAUGu-GCCGGCu--- -3' miRNA: 3'- aCCGGGACCucUACuuCGGCUGccug -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 51586 | 0.66 | 0.826983 |
Target: 5'- cGGCCgaaggGGGGAcUGAGGCCGGuugcgucgGGACa -3' miRNA: 3'- aCCGGga---CCUCU-ACUUCGGCUg-------CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 135327 | 0.66 | 0.826983 |
Target: 5'- aUGGCUCU-GAGggGAGGC--ACGGGCg -3' miRNA: 3'- -ACCGGGAcCUCuaCUUCGgcUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 52457 | 0.66 | 0.826983 |
Target: 5'- -cGCCCUGGAGA-GggGCCucaucaacACGGuCc -3' miRNA: 3'- acCGGGACCUCUaCuuCGGc-------UGCCuG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 103841 | 0.66 | 0.826983 |
Target: 5'- cGGCCCgucuggcaGAGGUGGucuccgucccGGCCGAcugucggcuccCGGACa -3' miRNA: 3'- aCCGGGac------CUCUACU----------UCGGCU-----------GCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 39257 | 0.66 | 0.826983 |
Target: 5'- cGGCCCUGaGgaacGGGUGuGGGCCc-CGGACu -3' miRNA: 3'- aCCGGGAC-C----UCUAC-UUCGGcuGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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