Results 41 - 60 of 249 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29102 | 5' | -58.3 | NC_006146.1 | + | 10227 | 0.66 | 0.826983 |
Target: 5'- cGGCCCUGGucAUGu-GCCGGCu--- -3' miRNA: 3'- aCCGGGACCucUACuuCGGCUGccug -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 127057 | 0.66 | 0.823652 |
Target: 5'- aGGCCCUcGAGcuggcggcgcggGAAGCCGAaagggccaGGGCg -3' miRNA: 3'- aCCGGGAcCUCua----------CUUCGGCUg-------CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 115795 | 0.66 | 0.818605 |
Target: 5'- aGGCCCUGGAGcUGAacAGgauguucuCCGAgaGGAUc -3' miRNA: 3'- aCCGGGACCUCuACU--UC--------GGCUg-CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 34011 | 0.66 | 0.818605 |
Target: 5'- aGGCaggggGGGGGUcGggGCaGGCGGGCg -3' miRNA: 3'- aCCGgga--CCUCUA-CuuCGgCUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 166334 | 0.66 | 0.818605 |
Target: 5'- aGGCCCgGGugcucGGUGAauAGCUGGgGGAg -3' miRNA: 3'- aCCGGGaCCu----CUACU--UCGGCUgCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 109344 | 0.66 | 0.818605 |
Target: 5'- gUGGCCCUcGGGGUGggGaauaGACagcgaGGGCg -3' miRNA: 3'- -ACCGGGAcCUCUACuuCgg--CUG-----CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 115150 | 0.66 | 0.817758 |
Target: 5'- cUGGCCCgccgccgggcggUGGAGAucuUGGgcguguacgcggaGGCCagcGGCGGGCa -3' miRNA: 3'- -ACCGGG------------ACCUCU---ACU-------------UCGG---CUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 167541 | 0.66 | 0.810064 |
Target: 5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3' miRNA: 3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 170336 | 0.66 | 0.810064 |
Target: 5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3' miRNA: 3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 169405 | 0.66 | 0.810064 |
Target: 5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3' miRNA: 3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 157115 | 0.66 | 0.810064 |
Target: 5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3' miRNA: 3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 138051 | 0.66 | 0.810064 |
Target: 5'- -cGCCCgcuucaugGGGGggGAGGCCGccgcaaGGACg -3' miRNA: 3'- acCGGGa-------CCUCuaCUUCGGCug----CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 113012 | 0.66 | 0.810064 |
Target: 5'- cGGCCUUGaGGcGAUGGAGCaGACgcccggccaGGACg -3' miRNA: 3'- aCCGGGAC-CU-CUACUUCGgCUG---------CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 141725 | 0.66 | 0.810064 |
Target: 5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3' miRNA: 3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 144803 | 0.66 | 0.810064 |
Target: 5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3' miRNA: 3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 147881 | 0.66 | 0.810064 |
Target: 5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3' miRNA: 3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 150959 | 0.66 | 0.810064 |
Target: 5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3' miRNA: 3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 154037 | 0.66 | 0.810064 |
Target: 5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3' miRNA: 3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 112730 | 0.66 | 0.810064 |
Target: 5'- aGGCCCguguacaGGcAGGUGGucgaggcgcagaAGCCGGCcaGGGCa -3' miRNA: 3'- aCCGGGa------CC-UCUACU------------UCGGCUG--CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 34221 | 0.66 | 0.810064 |
Target: 5'- -cGCCCgcuucaugGGGGggGAGGCCGccgcaaGGACg -3' miRNA: 3'- acCGGGa-------CCUCuaCUUCGGCug----CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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