miRNA display CGI


Results 61 - 80 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 141725 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 100067 0.67 0.802244
Target:  5'- aGGggCUGGaAGAUGAGGCCGuguuccuccuccaccCGGACg -3'
miRNA:   3'- aCCggGACC-UCUACUUCGGCu--------------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 56240 0.67 0.801368
Target:  5'- gGGUCCgcgGGGGcgGAGGCggggccguccuCGGCGGGg -3'
miRNA:   3'- aCCGGGa--CCUCuaCUUCG-----------GCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 19713 0.67 0.801368
Target:  5'- cUGGUCCacgGGGGAgGAGGCCGGCc--- -3'
miRNA:   3'- -ACCGGGa--CCUCUaCUUCGGCUGccug -5'
29102 5' -58.3 NC_006146.1 + 66485 0.67 0.801368
Target:  5'- gGGCa-UGGGGAggcUGguGCUGACGGAUu -3'
miRNA:   3'- aCCGggACCUCU---ACuuCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 145402 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 148480 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 151558 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 154636 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 157713 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 38162 0.67 0.801368
Target:  5'- cGGCCCcGGAGAaccggggcuacUGggGaCCacCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCU-----------ACuuC-GGcuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 142324 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 14157 0.67 0.800489
Target:  5'- cUGGCCgUGGAGcUGAGcgucugcGCCaGGCuGGACc -3'
miRNA:   3'- -ACCGGgACCUCuACUU-------CGG-CUG-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 150897 0.67 0.792523
Target:  5'- uUGGCCC-GGAG--GAAGCCcuucccggcgucGugGGGCc -3'
miRNA:   3'- -ACCGGGaCCUCuaCUUCGG------------CugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 39868 0.67 0.792523
Target:  5'- gUGuGCCCgggGGAGGaggcUGAGGCUGAgCGGcCu -3'
miRNA:   3'- -AC-CGGGa--CCUCU----ACUUCGGCU-GCCuG- -5'
29102 5' -58.3 NC_006146.1 + 41605 0.67 0.792523
Target:  5'- aGGCCCgGGGGGcUGGuccGCUGGgccCGGGCg -3'
miRNA:   3'- aCCGGGaCCUCU-ACUu--CGGCU---GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 156916 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 153838 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 150760 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 144605 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.