miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 14843 0.71 0.567837
Target:  5'- gGGCCC-GGGGccgcggGAGGCCGAgGGGg -3'
miRNA:   3'- aCCGGGaCCUCua----CUUCGGCUgCCUg -5'
29102 5' -58.3 NC_006146.1 + 15833 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 17470 0.67 0.765186
Target:  5'- gGGCCg-GGAGAgGcAGCCccgaGGCGGGCa -3'
miRNA:   3'- aCCGGgaCCUCUaCuUCGG----CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 18911 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 19713 0.67 0.801368
Target:  5'- cUGGUCCacgGGGGAgGAGGCCGGCc--- -3'
miRNA:   3'- -ACCGGGa--CCUCUaCUUCGGCUGccug -5'
29102 5' -58.3 NC_006146.1 + 20548 0.67 0.765186
Target:  5'- gGGCCg-GGAGAgGcAGCCccgaGGCGGGCa -3'
miRNA:   3'- aCCGGgaCCUCUaCuUCGG----CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 21988 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 23470 0.69 0.677962
Target:  5'- aGGCCCUGGccGUGGccagguacgGGCUGGUGGGCu -3'
miRNA:   3'- aCCGGGACCucUACU---------UCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 23626 0.67 0.765186
Target:  5'- gGGCCg-GGAGAgGcAGCCccgaGGCGGGCa -3'
miRNA:   3'- aCCGGgaCCUCUaCuUCGG----CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 25066 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 26176 0.66 0.843218
Target:  5'- cGGCCUggaGGGGAUuAGGUCGGaggGGGCg -3'
miRNA:   3'- aCCGGGa--CCUCUAcUUCGGCUg--CCUG- -5'
29102 5' -58.3 NC_006146.1 + 26704 0.67 0.765186
Target:  5'- gGGCCg-GGAGAgGcAGCCccgaGGCGGGCa -3'
miRNA:   3'- aCCGGgaCCUCUaCuUCGG----CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 28144 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 33096 0.71 0.527654
Target:  5'- cGGCUCUGGggcagccGGGUGGccGCCGGCGGGu -3'
miRNA:   3'- aCCGGGACC-------UCUACUu-CGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 33213 0.67 0.774424
Target:  5'- aGGCC--GGAGggGGAGCCGGgaugGGGCu -3'
miRNA:   3'- aCCGGgaCCUCuaCUUCGGCUg---CCUG- -5'
29102 5' -58.3 NC_006146.1 + 34011 0.66 0.818605
Target:  5'- aGGCaggggGGGGGUcGggGCaGGCGGGCg -3'
miRNA:   3'- aCCGgga--CCUCUA-CuuCGgCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 34221 0.66 0.810064
Target:  5'- -cGCCCgcuucaugGGGGggGAGGCCGccgcaaGGACg -3'
miRNA:   3'- acCGGGa-------CCUCuaCUUCGGCug----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 38162 0.67 0.801368
Target:  5'- cGGCCCcGGAGAaccggggcuacUGggGaCCacCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCU-----------ACuuC-GGcuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 39257 0.66 0.826983
Target:  5'- cGGCCCUGaGgaacGGGUGuGGGCCc-CGGACu -3'
miRNA:   3'- aCCGGGAC-C----UCUAC-UUCGGcuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 39665 0.67 0.755835
Target:  5'- -uGCCUUGGccuUGGAGgCGGCGGGCu -3'
miRNA:   3'- acCGGGACCucuACUUCgGCUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.