miRNA display CGI


Results 41 - 60 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 39868 0.67 0.792523
Target:  5'- gUGuGCCCgggGGAGGaggcUGAGGCUGAgCGGcCu -3'
miRNA:   3'- -AC-CGGGa--CCUCU----ACUUCGGCU-GCCuG- -5'
29102 5' -58.3 NC_006146.1 + 40029 0.66 0.846378
Target:  5'- gGGCCUgcugGGGGccGuAGCCGACuccggcguguccguaGGACa -3'
miRNA:   3'- aCCGGGa---CCUCuaCuUCGGCUG---------------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 40466 0.66 0.850286
Target:  5'- aUGG-CCUGGuGGGUGAaggggggcagaggGGCCGcgaaaggcaGCGGACu -3'
miRNA:   3'- -ACCgGGACC-UCUACU-------------UCGGC---------UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 40742 0.66 0.835189
Target:  5'- gGGCCCgugcuUGGGGcu--GGCC-ACGGACg -3'
miRNA:   3'- aCCGGG-----ACCUCuacuUCGGcUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 40877 0.67 0.755835
Target:  5'- cGGUCC-GGAGAcGGAGCCG--GGGCc -3'
miRNA:   3'- aCCGGGaCCUCUaCUUCGGCugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 40994 0.66 0.845591
Target:  5'- cUGGCCCUGucuggucagggcgaaGAGccGGgcgucagAGCCGugGGAg -3'
miRNA:   3'- -ACCGGGAC---------------CUCuaCU-------UCGGCugCCUg -5'
29102 5' -58.3 NC_006146.1 + 41057 0.73 0.421783
Target:  5'- cGGCCCUGGGGGccucgggguggaggGAGGCC-AgGGACa -3'
miRNA:   3'- aCCGGGACCUCUa-------------CUUCGGcUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 41243 0.68 0.706689
Target:  5'- cGGCCCUGcucuGGUacagaccccagacGGAGCCGACcgGGGCg -3'
miRNA:   3'- aCCGGGACcu--CUA-------------CUUCGGCUG--CCUG- -5'
29102 5' -58.3 NC_006146.1 + 41605 0.67 0.792523
Target:  5'- aGGCCCgGGGGGcUGGuccGCUGGgccCGGGCg -3'
miRNA:   3'- aCCGGGaCCUCU-ACUu--CGGCU---GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 42337 0.68 0.746378
Target:  5'- cUGGCCCgGGAGGUcagugucuGAGCCG--GGACg -3'
miRNA:   3'- -ACCGGGaCCUCUAc-------UUCGGCugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 44625 0.66 0.843218
Target:  5'- aUGGCCaUGG-GGUGGAGCUGGaGaGGCg -3'
miRNA:   3'- -ACCGGgACCuCUACUUCGGCUgC-CUG- -5'
29102 5' -58.3 NC_006146.1 + 44689 0.69 0.667975
Target:  5'- gGGCCC-GGAGAgGAGGacgaUGAgGGACu -3'
miRNA:   3'- aCCGGGaCCUCUaCUUCg---GCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 44754 0.71 0.548119
Target:  5'- cGGCUgUGGuuGUcGggGcCCGGCGGGCg -3'
miRNA:   3'- aCCGGgACCucUA-CuuC-GGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 44761 0.66 0.835189
Target:  5'- gGGCUCUcgGGGGAgagGguGCCGugcCGGGCu -3'
miRNA:   3'- aCCGGGA--CCUCUa--CuuCGGCu--GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 45059 0.69 0.647926
Target:  5'- gGGCCUUGGGcuuGAUGA--CCGGuCGGACu -3'
miRNA:   3'- aCCGGGACCU---CUACUucGGCU-GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 46218 0.74 0.384767
Target:  5'- aGGCuuCCUGGAGGaaaaUGAAGCCGGagggaGGGCc -3'
miRNA:   3'- aCCG--GGACCUCU----ACUUCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 46608 0.74 0.409772
Target:  5'- cUGGCCCUGGAagagccuguuGAUGucccGGCCGuucCGGAUg -3'
miRNA:   3'- -ACCGGGACCU----------CUACu---UCGGCu--GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 47753 0.69 0.687913
Target:  5'- cUGGCCCUGGGGAcGGAGa--GCGGcCu -3'
miRNA:   3'- -ACCGGGACCUCUaCUUCggcUGCCuG- -5'
29102 5' -58.3 NC_006146.1 + 48015 0.67 0.765186
Target:  5'- aGG-CUUGGcGGggGAGGCaCGGCGGGCc -3'
miRNA:   3'- aCCgGGACC-UCuaCUUCG-GCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 48222 0.68 0.726214
Target:  5'- aGGgCCUGGcgcgccuGGGUGAGcGCCGcGCGGAg -3'
miRNA:   3'- aCCgGGACC-------UCUACUU-CGGC-UGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.