miRNA display CGI


Results 61 - 80 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 49977 0.7 0.627828
Target:  5'- aUGGUCCucuUGGAGAaaucaaaGAGGCCGuCGGAg -3'
miRNA:   3'- -ACCGGG---ACCUCUa------CUUCGGCuGCCUg -5'
29102 5' -58.3 NC_006146.1 + 51573 0.66 0.835189
Target:  5'- gGGCgCCgccgGGAGGggcccgggGGAGCCaGAgGGGCc -3'
miRNA:   3'- aCCG-GGa---CCUCUa-------CUUCGG-CUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 51586 0.66 0.826983
Target:  5'- cGGCCgaaggGGGGAcUGAGGCCGGuugcgucgGGACa -3'
miRNA:   3'- aCCGGga---CCUCU-ACUUCGGCUg-------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 51937 0.66 0.850286
Target:  5'- cGGCCCcGGugcGGucugcgcgccaacUGgcGCCGACGGGg -3'
miRNA:   3'- aCCGGGaCCu--CU-------------ACuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 52457 0.66 0.826983
Target:  5'- -cGCCCUGGAGA-GggGCCucaucaacACGGuCc -3'
miRNA:   3'- acCGGGACCUCUaCuuCGGc-------UGCCuG- -5'
29102 5' -58.3 NC_006146.1 + 54329 0.68 0.736824
Target:  5'- uUGGCCCcuacgUGGAuGA-GggGCaCG-CGGACg -3'
miRNA:   3'- -ACCGGG-----ACCU-CUaCuuCG-GCuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 54837 0.66 0.834377
Target:  5'- gGGCCaaauCUGGAacucGAUGAaggcGGCCGggaaaaaugggcuGCGGGCg -3'
miRNA:   3'- aCCGG----GACCU----CUACU----UCGGC-------------UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 55261 0.67 0.783539
Target:  5'- cGGCCCgGGcGAaGcGGCuCGugGGGCu -3'
miRNA:   3'- aCCGGGaCCuCUaCuUCG-GCugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 56240 0.67 0.801368
Target:  5'- gGGUCCgcgGGGGcgGAGGCggggccguccuCGGCGGGg -3'
miRNA:   3'- aCCGGGa--CCUCuaCUUCG-----------GCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 59247 0.68 0.746378
Target:  5'- aUGGCCCggaucUGaGAGAUGAGGUauagGAUGGGg -3'
miRNA:   3'- -ACCGGG-----AC-CUCUACUUCGg---CUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 60467 0.7 0.627828
Target:  5'- aGGCCgCggGGAGcgGUGAgaGGCCGGgGGGCc -3'
miRNA:   3'- aCCGG-Ga-CCUC--UACU--UCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 61316 0.66 0.843218
Target:  5'- cGGCguCCUGcccGGGUGGccuAGCCGGCGaGGCa -3'
miRNA:   3'- aCCG--GGACc--UCUACU---UCGGCUGC-CUG- -5'
29102 5' -58.3 NC_006146.1 + 62994 0.72 0.518969
Target:  5'- cUGGCCCUGGGcuccgGGAGuCUGGCGGGu -3'
miRNA:   3'- -ACCGGGACCUcua--CUUC-GGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 64704 0.68 0.746378
Target:  5'- aGGCCCUGGcag-GAGGCCcg-GGACc -3'
miRNA:   3'- aCCGGGACCucuaCUUCGGcugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 65840 0.68 0.746378
Target:  5'- gGGCCagUGGuGAUGugguGCCGucccaGCGGACu -3'
miRNA:   3'- aCCGGg-ACCuCUACuu--CGGC-----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 66485 0.67 0.801368
Target:  5'- gGGCa-UGGGGAggcUGguGCUGACGGAUu -3'
miRNA:   3'- aCCGggACCUCU---ACuuCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 67013 0.7 0.585732
Target:  5'- aUGGCCCgGGuGAgccgcguguccgGGAGCCGACagucggccgGGACg -3'
miRNA:   3'- -ACCGGGaCCuCUa-----------CUUCGGCUG---------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 68059 0.67 0.759589
Target:  5'- -uGCCCUGGcugccaacagggGGGUGGAGUCuaugcucuacgucauGACGGACc -3'
miRNA:   3'- acCGGGACC------------UCUACUUCGG---------------CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 68882 0.7 0.597723
Target:  5'- cUGGCCCugaUGGAGAUGGAGaagguggccaCCGcgcucaaaAUGGACg -3'
miRNA:   3'- -ACCGGG---ACCUCUACUUC----------GGC--------UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 69853 0.66 0.843218
Target:  5'- gUGGCCCUgGGAGGUcgggcguaGAGGCCcagguccACGGcCg -3'
miRNA:   3'- -ACCGGGA-CCUCUA--------CUUCGGc------UGCCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.