miRNA display CGI


Results 81 - 100 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 70154 0.68 0.746378
Target:  5'- aGGCUCcagauagagcaUGGGGGUGAGGUgGugGGcCg -3'
miRNA:   3'- aCCGGG-----------ACCUCUACUUCGgCugCCuG- -5'
29102 5' -58.3 NC_006146.1 + 70155 0.66 0.843218
Target:  5'- cUGGCuCCUGGccgGGGcgcUGGuGGCCGGCGaGGCc -3'
miRNA:   3'- -ACCG-GGACC---UCU---ACU-UCGGCUGC-CUG- -5'
29102 5' -58.3 NC_006146.1 + 70852 0.69 0.691881
Target:  5'- gGGCCCgGuGAGGgaacacgaccgcgaGAAGCCG-CGGACc -3'
miRNA:   3'- aCCGGGaC-CUCUa-------------CUUCGGCuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 71104 0.72 0.503673
Target:  5'- aGGCCCauugcagcacuagcaUGGAGAgauUGGAGCCcuCGGGCu -3'
miRNA:   3'- aCCGGG---------------ACCUCU---ACUUCGGcuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 71172 0.67 0.774424
Target:  5'- gUGGCUUgGGuGGUGGuAGCCGGUGGGCc -3'
miRNA:   3'- -ACCGGGaCCuCUACU-UCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 71773 0.72 0.481107
Target:  5'- gGaGCCCcugUGGAGAcgccUGAGGCCGGaGGGCa -3'
miRNA:   3'- aC-CGGG---ACCUCU----ACUUCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 71869 0.74 0.375051
Target:  5'- gGGCCCUGGGGGgccucuacacGGCCGucacGCGGACc -3'
miRNA:   3'- aCCGGGACCUCUacu-------UCGGC----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 72357 0.69 0.677962
Target:  5'- gGGCCCUGGAcc---GGCUGGCGG-Cg -3'
miRNA:   3'- aCCGGGACCUcuacuUCGGCUGCCuG- -5'
29102 5' -58.3 NC_006146.1 + 73391 0.7 0.607743
Target:  5'- gGGCCUucacgugGGAGcgGAGGUCG-CGGAUg -3'
miRNA:   3'- aCCGGGa------CCUCuaCUUCGGCuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 74733 0.71 0.537366
Target:  5'- aGGCCCUGGAGGgacccagUGAgccAGCCucCGGGg -3'
miRNA:   3'- aCCGGGACCUCU-------ACU---UCGGcuGCCUg -5'
29102 5' -58.3 NC_006146.1 + 77974 0.7 0.597723
Target:  5'- gUGGCCUUGGAGGU---GCCGGuccucucugucUGGACa -3'
miRNA:   3'- -ACCGGGACCUCUAcuuCGGCU-----------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 78106 0.69 0.687913
Target:  5'- aGGCCCUGGaAGAcaggGAAGCCuGAgaGGCa -3'
miRNA:   3'- aCCGGGACC-UCUa---CUUCGG-CUgcCUG- -5'
29102 5' -58.3 NC_006146.1 + 84840 0.66 0.840829
Target:  5'- -uGCCCcuugauccagaagcUGGAGG---AGCCGACGGAg -3'
miRNA:   3'- acCGGG--------------ACCUCUacuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 89793 0.68 0.697819
Target:  5'- aUGGCCgUGGAcGAggacGAGGCagaGGCGGGg -3'
miRNA:   3'- -ACCGGgACCU-CUa---CUUCGg--CUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 91107 0.67 0.765186
Target:  5'- gUGGCagCggagGGAGGUGAGgguGCCGAgGGAg -3'
miRNA:   3'- -ACCGg-Ga---CCUCUACUU---CGGCUgCCUg -5'
29102 5' -58.3 NC_006146.1 + 92002 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92032 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92091 0.68 0.736824
Target:  5'- cGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92121 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 92151 0.67 0.765186
Target:  5'- gGGCCCggccUGGGGcUGcuGCUGGgGGGCg -3'
miRNA:   3'- aCCGGG----ACCUCuACuuCGGCUgCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.