miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 170336 0.66 0.810064
Target:  5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3'
miRNA:   3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 170228 0.69 0.677962
Target:  5'- gGGUCCcGGGGcggGggGUCGgGCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCua-CuuCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 170105 0.67 0.755835
Target:  5'- cGGCgCCgc-AGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGaccUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 170065 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 169965 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 169405 0.66 0.810064
Target:  5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3'
miRNA:   3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 169297 0.69 0.677962
Target:  5'- gGGUCCcGGGGcggGggGUCGgGCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCua-CuuCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 169173 0.76 0.316042
Target:  5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 169133 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 169033 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 168473 0.66 0.810064
Target:  5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3'
miRNA:   3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 168365 0.69 0.677962
Target:  5'- gGGUCCcGGGGcggGggGUCGgGCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCua-CuuCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 168241 0.76 0.316042
Target:  5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 168201 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 168101 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 167541 0.66 0.810064
Target:  5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3'
miRNA:   3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 167433 0.69 0.677962
Target:  5'- gGGUCCcGGGGcggGggGUCGgGCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCua-CuuCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 167309 0.76 0.316042
Target:  5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 167269 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 167169 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.