miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 166334 0.66 0.818605
Target:  5'- aGGCCCgGGugcucGGUGAauAGCUGGgGGAg -3'
miRNA:   3'- aCCGGGaCCu----CUACU--UCGGCUgCCUg -5'
29102 5' -58.3 NC_006146.1 + 162362 0.73 0.435765
Target:  5'- aGcGCCUUGGAGAUGGAGCCccuuGGCGcGCc -3'
miRNA:   3'- aC-CGGGACCUCUACUUCGG----CUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 161111 0.76 0.3014
Target:  5'- gGGCCCUGGAGA-GGAGCaGACgcucauuGGGCg -3'
miRNA:   3'- aCCGGGACCUCUaCUUCGgCUG-------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 160107 0.7 0.627828
Target:  5'- cGGCCUcuagUGGAGGauagagUGAauGGgCGGCGGACu -3'
miRNA:   3'- aCCGGG----ACCUCU------ACU--UCgGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 159312 0.66 0.843218
Target:  5'- gGGCCa-GGAGucguaguUGAGGCUGGCcGGCg -3'
miRNA:   3'- aCCGGgaCCUCu------ACUUCGGCUGcCUG- -5'
29102 5' -58.3 NC_006146.1 + 157713 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 157611 0.68 0.746378
Target:  5'- aGGaCgCCUGGAGgcGGAcCCGAgGGGCu -3'
miRNA:   3'- aCC-G-GGACCUCuaCUUcGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 157330 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 157115 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 156970 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 156922 0.71 0.557953
Target:  5'- aGGCCUgGGuGgcGgcGCUGACGGGCu -3'
miRNA:   3'- aCCGGGaCCuCuaCuuCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 156916 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 156866 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 156518 0.67 0.755835
Target:  5'- cGGCCCggaggGGAGcgGGAGgCGAgauccCGGGa -3'
miRNA:   3'- aCCGGGa----CCUCuaCUUCgGCU-----GCCUg -5'
29102 5' -58.3 NC_006146.1 + 155623 0.79 0.19695
Target:  5'- gGGCCCUGGAGGUGAAGUuaccuacccuuacUGGUGGACc -3'
miRNA:   3'- aCCGGGACCUCUACUUCG-------------GCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 154636 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 154533 0.68 0.746378
Target:  5'- aGGaCgCCUGGAGgcGGAcCCGAgGGGCu -3'
miRNA:   3'- aCC-G-GGACCUCuaCUUcGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 154252 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 154037 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 153892 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.