miRNA display CGI


Results 41 - 60 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 153838 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 153788 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 153520 0.68 0.746378
Target:  5'- aGGCUgUGGAugGAgugGggGgCGugGGGCu -3'
miRNA:   3'- aCCGGgACCU--CUa--CuuCgGCugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 153058 0.74 0.392989
Target:  5'- aGGUCUUGGugucguuGAUGAAGCUGAaGGACa -3'
miRNA:   3'- aCCGGGACCu------CUACUUCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 152545 0.79 0.19695
Target:  5'- gGGCCCUGGAGGUGAAGUuaccuacccuuacUGGUGGACc -3'
miRNA:   3'- aCCGGGACCUCUACUUCG-------------GCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 151558 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 151455 0.68 0.746378
Target:  5'- aGGaCgCCUGGAGgcGGAcCCGAgGGGCu -3'
miRNA:   3'- aCC-G-GGACCUCuaCUUcGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 151174 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150959 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 150897 0.67 0.792523
Target:  5'- uUGGCCC-GGAG--GAAGCCcuucccggcgucGugGGGCc -3'
miRNA:   3'- -ACCGGGaCCUCuaCUUCGG------------CugCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150859 0.69 0.647926
Target:  5'- -uGUCaaUGGGGAUGAGGCCGgugauGCGGACc -3'
miRNA:   3'- acCGGg-ACCUCUACUUCGGC-----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150814 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 150760 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 150710 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 150668 0.66 0.851062
Target:  5'- gUGGCCggGGAGGggugggGAguGGCCaGGgGGACg -3'
miRNA:   3'- -ACCGGgaCCUCUa-----CU--UCGG-CUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 149467 0.79 0.19695
Target:  5'- gGGCCCUGGAGGUGAAGUuaccuacccuuacUGGUGGACc -3'
miRNA:   3'- aCCGGGACCUCUACUUCG-------------GCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 148480 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 148377 0.68 0.746378
Target:  5'- aGGaCgCCUGGAGgcGGAcCCGAgGGGCu -3'
miRNA:   3'- aCC-G-GGACCUCuaCUUcGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 148096 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 147881 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.