miRNA display CGI


Results 61 - 80 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 147736 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 147633 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 146389 0.79 0.19695
Target:  5'- gGGCCCUGGAGGUGAAGUuaccuacccuuacUGGUGGACc -3'
miRNA:   3'- aCCGGGACCUCUACUUCG-------------GCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 145402 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 145299 0.68 0.746378
Target:  5'- aGGaCgCCUGGAGgcGGAcCCGAgGGGCu -3'
miRNA:   3'- aCC-G-GGACCUCuaCUUcGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 145018 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 144803 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 144659 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 144605 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 144555 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 143311 0.79 0.19695
Target:  5'- gGGCCCUGGAGGUGAAGUuaccuacccuuacUGGUGGACc -3'
miRNA:   3'- aCCGGGACCUCUACUUCG-------------GCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 142324 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 142221 0.68 0.746378
Target:  5'- aGGaCgCCUGGAGgcGGAcCCGAgGGGCu -3'
miRNA:   3'- aCC-G-GGACCUCuaCUUcGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 142160 0.66 0.843218
Target:  5'- gUGGCCCuuUGGGGAUGAuguGGCUGcuGCuGGuGCu -3'
miRNA:   3'- -ACCGGG--ACCUCUACU---UCGGC--UG-CC-UG- -5'
29102 5' -58.3 NC_006146.1 + 141940 0.69 0.647926
Target:  5'- aGGCCCcuguccgcgagGGAGAgucucuGGCCGgGCGGGCg -3'
miRNA:   3'- aCCGGGa----------CCUCUacu---UCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 141725 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 141581 0.66 0.851062
Target:  5'- gGGCCUcggggagGGAGAgagGAGGgggaGGCGGGCg -3'
miRNA:   3'- aCCGGGa------CCUCUa--CUUCgg--CUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 141527 0.67 0.791631
Target:  5'- gGGCCUgGGAGGcugguucUGggGCUGGacuugGGACa -3'
miRNA:   3'- aCCGGGaCCUCU-------ACuuCGGCUg----CCUG- -5'
29102 5' -58.3 NC_006146.1 + 141477 0.66 0.843218
Target:  5'- cUGGCCUgcgGGGGAcaGGGUgGACGGGg -3'
miRNA:   3'- -ACCGGGa--CCUCUacUUCGgCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 139600 0.68 0.746378
Target:  5'- gGGgCgaGGAGGagaaggccuccaUGGAGCCGAUGGGg -3'
miRNA:   3'- aCCgGgaCCUCU------------ACUUCGGCUGCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.