miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 128339 1.1 0.001697
Target:  5'- cUGGCCCUGGAGAUGAAGCCGACGGACg -3'
miRNA:   3'- -ACCGGGACCUCUACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135635 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135913 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 101574 0.66 0.851062
Target:  5'- gUGGagCUGGAGuUGGAGCCaacGACGaGGCc -3'
miRNA:   3'- -ACCggGACCUCuACUUCGG---CUGC-CUG- -5'
29102 5' -58.3 NC_006146.1 + 21988 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 25066 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 161111 0.76 0.3014
Target:  5'- gGGCCCUGGAGA-GGAGCaGACgcucauuGGGCg -3'
miRNA:   3'- aCCGGGACCUCUaCUUCGgCUG-------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 167309 0.76 0.316042
Target:  5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 123411 0.75 0.33048
Target:  5'- cGGCCUUGGGGu---AGCCGACGGugaGCa -3'
miRNA:   3'- aCCGGGACCUCuacuUCGGCUGCC---UG- -5'
29102 5' -58.3 NC_006146.1 + 135542 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135263 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 169173 0.76 0.316042
Target:  5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 12754 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135356 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 15833 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 168241 0.76 0.316042
Target:  5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 135449 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135820 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 18911 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 28144 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.