miRNA display CGI


Results 41 - 60 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 137214 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135635 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 15833 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 137121 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 12754 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 167169 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 21988 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 67013 0.7 0.585732
Target:  5'- aUGGCCCgGGuGAgccgcguguccgGGAGCCGACagucggccgGGACg -3'
miRNA:   3'- -ACCGGGaCCuCUa-----------CUUCGGCUG---------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 156922 0.71 0.557953
Target:  5'- aGGCCUgGGuGgcGgcGCUGACGGGCu -3'
miRNA:   3'- aCCGGGaCCuCuaCuuCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 62994 0.72 0.518969
Target:  5'- cUGGCCCUGGGcuccgGGAGuCUGGCGGGu -3'
miRNA:   3'- -ACCGGGACCUcua--CUUC-GGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 170065 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 153058 0.74 0.392989
Target:  5'- aGGUCUUGGugucguuGAUGAAGCUGAaGGACa -3'
miRNA:   3'- aCCGGGACCu------CUACUUCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 137400 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136842 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136564 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136192 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135913 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135356 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 123411 0.75 0.33048
Target:  5'- cGGCCUUGGGGu---AGCCGACGGugaGCa -3'
miRNA:   3'- aCCGGGACCUCuacuUCGGCUGCC---UG- -5'
29102 5' -58.3 NC_006146.1 + 161111 0.76 0.3014
Target:  5'- gGGCCCUGGAGA-GGAGCaGACgcucauuGGGCg -3'
miRNA:   3'- aCCGGGACCUCUaCUUCGgCUG-------CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.