miRNA display CGI


Results 61 - 80 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 137400 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 168201 0.73 0.41833
Target:  5'- gGGCCCggggccgcgcgUGGGGAU--GGCCGGCGGGa -3'
miRNA:   3'- aCCGGG-----------ACCUCUAcuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 25066 0.81 0.150277
Target:  5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3'
miRNA:   3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 167309 0.76 0.316042
Target:  5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 135170 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135449 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136006 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136285 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136657 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 136935 0.75 0.345397
Target:  5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3'
miRNA:   3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 170105 0.67 0.755835
Target:  5'- cGGCgCCgc-AGggGggGCCGGCGGGg -3'
miRNA:   3'- aCCG-GGaccUCuaCuuCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 65840 0.68 0.746378
Target:  5'- gGGCCagUGGuGAUGugguGCCGucccaGCGGACu -3'
miRNA:   3'- aCCGGg-ACCuCUACuu--CGGC-----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 71104 0.72 0.503673
Target:  5'- aGGCCCauugcagcacuagcaUGGAGAgauUGGAGCCcuCGGGCu -3'
miRNA:   3'- aCCGGG---------------ACCUCU---ACUUCGGcuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 74733 0.71 0.537366
Target:  5'- aGGCCCUGGAGGgacccagUGAgccAGCCucCGGGg -3'
miRNA:   3'- aCCGGGACCUCU-------ACU---UCGGcuGCCUg -5'
29102 5' -58.3 NC_006146.1 + 67013 0.7 0.585732
Target:  5'- aUGGCCCgGGuGAgccgcguguccgGGAGCCGACagucggccgGGACg -3'
miRNA:   3'- -ACCGGGaCCuCUa-----------CUUCGGCUG---------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 167169 0.7 0.607743
Target:  5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3'
miRNA:   3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5'
29102 5' -58.3 NC_006146.1 + 150859 0.69 0.647926
Target:  5'- -uGUCaaUGGGGAUGAGGCCGgugauGCGGACc -3'
miRNA:   3'- acCGGg-ACCUCUACUUCGGC-----UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 169297 0.69 0.677962
Target:  5'- gGGUCCcGGGGcggGggGUCGgGCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCua-CuuCGGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 2468 0.68 0.697819
Target:  5'- gGGUCuUUGGcGGUGuGGCCGGCGGGg -3'
miRNA:   3'- aCCGG-GACCuCUACuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 48222 0.68 0.726214
Target:  5'- aGGgCCUGGcgcgccuGGGUGAGcGCCGcGCGGAg -3'
miRNA:   3'- aCCgGGACC-------UCUACUU-CGGC-UGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.