Results 81 - 100 of 249 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29102 | 5' | -58.3 | NC_006146.1 | + | 33096 | 0.71 | 0.527654 |
Target: 5'- cGGCUCUGGggcagccGGGUGGccGCCGGCGGGu -3' miRNA: 3'- aCCGGGACC-------UCUACUu-CGGCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 137586 | 0.71 | 0.567837 |
Target: 5'- cGGUCCUGGAGcucGGGCCGG-GGGCc -3' miRNA: 3'- aCCGGGACCUCuacUUCGGCUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 5238 | 0.7 | 0.587728 |
Target: 5'- cGGCCUcGGGGcuGUGggGUCcACGGACc -3' miRNA: 3'- aCCGGGaCCUC--UACuuCGGcUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 169033 | 0.7 | 0.607743 |
Target: 5'- gGGCCUUcGGGAcggGAGGCCGGCGcGCg -3' miRNA: 3'- aCCGGGAcCUCUa--CUUCGGCUGCcUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 167433 | 0.69 | 0.677962 |
Target: 5'- gGGUCCcGGGGcggGggGUCGgGCGGGCa -3' miRNA: 3'- aCCGGGaCCUCua-CuuCGGC-UGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 2468 | 0.68 | 0.697819 |
Target: 5'- gGGUCuUUGGcGGUGuGGCCGGCGGGg -3' miRNA: 3'- aCCGG-GACCuCUACuUCGGCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 48222 | 0.68 | 0.726214 |
Target: 5'- aGGgCCUGGcgcgccuGGGUGAGcGCCGcGCGGAg -3' miRNA: 3'- aCCgGGACC-------UCUACUU-CGGC-UGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 136935 | 0.75 | 0.345397 |
Target: 5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3' miRNA: 3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 136657 | 0.75 | 0.345397 |
Target: 5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3' miRNA: 3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 136285 | 0.75 | 0.345397 |
Target: 5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3' miRNA: 3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 23626 | 0.67 | 0.765186 |
Target: 5'- gGGCCg-GGAGAgGcAGCCccgaGGCGGGCa -3' miRNA: 3'- aCCGGgaCCUCUaCuUCGG----CUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 99573 | 0.67 | 0.783539 |
Target: 5'- gGGUCCaGGAGGU--AGaaGACGGGCu -3' miRNA: 3'- aCCGGGaCCUCUAcuUCggCUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 150897 | 0.67 | 0.792523 |
Target: 5'- uUGGCCC-GGAG--GAAGCCcuucccggcgucGugGGGCc -3' miRNA: 3'- -ACCGGGaCCUCuaCUUCGG------------CugCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 168473 | 0.66 | 0.810064 |
Target: 5'- cGGCCCcucuccugGGAGGccacgugugGAGGCCcGCGGAg -3' miRNA: 3'- aCCGGGa-------CCUCUa--------CUUCGGcUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 34221 | 0.66 | 0.810064 |
Target: 5'- -cGCCCgcuucaugGGGGggGAGGCCGccgcaaGGACg -3' miRNA: 3'- acCGGGa-------CCUCuaCUUCGGCug----CCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 25066 | 0.81 | 0.150277 |
Target: 5'- aGGCCC--GAGGuUGGAGCCGGCGGGCg -3' miRNA: 3'- aCCGGGacCUCU-ACUUCGGCUGCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 167309 | 0.76 | 0.316042 |
Target: 5'- cGGCgCCUGcAGggGggGCCGGCGGGg -3' miRNA: 3'- aCCG-GGACcUCuaCuuCGGCUGCCUg -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 135170 | 0.75 | 0.345397 |
Target: 5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3' miRNA: 3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 135449 | 0.75 | 0.345397 |
Target: 5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3' miRNA: 3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5' |
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29102 | 5' | -58.3 | NC_006146.1 | + | 136006 | 0.75 | 0.345397 |
Target: 5'- cGGUCCUGGAGcucGggGCCGG-GGGCc -3' miRNA: 3'- aCCGGGACCUCua-CuuCGGCUgCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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