miRNA display CGI


Results 61 - 80 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29102 5' -58.3 NC_006146.1 + 84840 0.66 0.840829
Target:  5'- -uGCCCcuugauccagaagcUGGAGG---AGCCGACGGAg -3'
miRNA:   3'- acCGGG--------------ACCUCUacuUCGGCUGCCUg -5'
29102 5' -58.3 NC_006146.1 + 51573 0.66 0.835189
Target:  5'- gGGCgCCgccgGGAGGggcccgggGGAGCCaGAgGGGCc -3'
miRNA:   3'- aCCG-GGa---CCUCUa-------CUUCGG-CUgCCUG- -5'
29102 5' -58.3 NC_006146.1 + 154037 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 150959 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 147881 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 144803 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 141725 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 113012 0.66 0.810064
Target:  5'- cGGCCUUGaGGcGAUGGAGCaGACgcccggccaGGACg -3'
miRNA:   3'- aCCGGGAC-CU-CUACUUCGgCUG---------CCUG- -5'
29102 5' -58.3 NC_006146.1 + 38162 0.67 0.801368
Target:  5'- cGGCCCcGGAGAaccggggcuacUGggGaCCacCGGGCa -3'
miRNA:   3'- aCCGGGaCCUCU-----------ACuuC-GGcuGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 157713 0.67 0.801368
Target:  5'- aGGCgCCcGGAGc-GAGGCCGGgcaggcCGGGCa -3'
miRNA:   3'- aCCG-GGaCCUCuaCUUCGGCU------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 157115 0.66 0.810064
Target:  5'- gGGCCggGGAGG-GAGGCgGGgaGGACa -3'
miRNA:   3'- aCCGGgaCCUCUaCUUCGgCUg-CCUG- -5'
29102 5' -58.3 NC_006146.1 + 112730 0.66 0.810064
Target:  5'- aGGCCCguguacaGGcAGGUGGucgaggcgcagaAGCCGGCcaGGGCa -3'
miRNA:   3'- aCCGGGa------CC-UCUACU------------UCGGCUG--CCUG- -5'
29102 5' -58.3 NC_006146.1 + 44761 0.66 0.835189
Target:  5'- gGGCUCUcgGGGGAgagGguGCCGugcCGGGCu -3'
miRNA:   3'- aCCGGGA--CCUCUa--CuuCGGCu--GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 12792 0.66 0.835189
Target:  5'- cGGCCCUGcAGggGcGGaCGuACGGACg -3'
miRNA:   3'- aCCGGGACcUCuaCuUCgGC-UGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 135327 0.66 0.826983
Target:  5'- aUGGCUCU-GAGggGAGGC--ACGGGCg -3'
miRNA:   3'- -ACCGGGAcCUCuaCUUCGgcUGCCUG- -5'
29102 5' -58.3 NC_006146.1 + 52457 0.66 0.826983
Target:  5'- -cGCCCUGGAGA-GggGCCucaucaacACGGuCc -3'
miRNA:   3'- acCGGGACCUCUaCuuCGGc-------UGCCuG- -5'
29102 5' -58.3 NC_006146.1 + 103841 0.66 0.826983
Target:  5'- cGGCCCgucuggcaGAGGUGGucuccgucccGGCCGAcugucggcuccCGGACa -3'
miRNA:   3'- aCCGGGac------CUCUACU----------UCGGCU-----------GCCUG- -5'
29102 5' -58.3 NC_006146.1 + 10227 0.66 0.826983
Target:  5'- cGGCCCUGGucAUGu-GCCGGCu--- -3'
miRNA:   3'- aCCGGGACCucUACuuCGGCUGccug -5'
29102 5' -58.3 NC_006146.1 + 166334 0.66 0.818605
Target:  5'- aGGCCCgGGugcucGGUGAauAGCUGGgGGAg -3'
miRNA:   3'- aCCGGGaCCu----CUACU--UCGGCUgCCUg -5'
29102 5' -58.3 NC_006146.1 + 115150 0.66 0.817758
Target:  5'- cUGGCCCgccgccgggcggUGGAGAucuUGGgcguguacgcggaGGCCagcGGCGGGCa -3'
miRNA:   3'- -ACCGGG------------ACCUCU---ACU-------------UCGG---CUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.