miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 3' -60.8 NC_006146.1 + 122027 0.65 0.774816
Target:  5'- aGGCGCAGGCcuGGCgCCUGgaggcCGACGgcuucgcgcccgccUCCGa -3'
miRNA:   3'- -CCGCGUCUG--UCGgGGGC-----GCUGU--------------AGGC- -5'
29103 3' -60.8 NC_006146.1 + 146020 0.66 0.768547
Target:  5'- aGGgGCAGggggGCAGCUCCUggcacuGCG-CGUCCa -3'
miRNA:   3'- -CCgCGUC----UGUCGGGGG------CGCuGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 47714 0.66 0.768547
Target:  5'- aGGUGgGGAgCAGCgCCCGgagcuCGuCGUCCGg -3'
miRNA:   3'- -CCGCgUCU-GUCGgGGGC-----GCuGUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 44252 0.66 0.768547
Target:  5'- cGGCGguGuCcauuGCCCCUGCGGgccCCGg -3'
miRNA:   3'- -CCGCguCuGu---CGGGGGCGCUguaGGC- -5'
29103 3' -60.8 NC_006146.1 + 156742 0.66 0.768547
Target:  5'- uGGCGCAGACgcucAGCUCCacggccagCGCGuACAcCUGg -3'
miRNA:   3'- -CCGCGUCUG----UCGGGG--------GCGC-UGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 20185 0.66 0.768547
Target:  5'- -uUGCAGAgGGCCCCCGgGggcGCAggaggCUGg -3'
miRNA:   3'- ccGCGUCUgUCGGGGGCgC---UGUa----GGC- -5'
29103 3' -60.8 NC_006146.1 + 42776 0.66 0.768547
Target:  5'- aGGUGCAGGCGGCg--CGUGGCcgCCu -3'
miRNA:   3'- -CCGCGUCUGUCGgggGCGCUGuaGGc -5'
29103 3' -60.8 NC_006146.1 + 119848 0.66 0.768547
Target:  5'- aGCgGCAGuCAucgggagaagauGCCUCCGUGGgAUCCGg -3'
miRNA:   3'- cCG-CGUCuGU------------CGGGGGCGCUgUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 791 0.66 0.768547
Target:  5'- gGGaCGCcccGcCGGCCCCCccuGCGGCG-CCGg -3'
miRNA:   3'- -CC-GCGu--CuGUCGGGGG---CGCUGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 99849 0.66 0.759498
Target:  5'- aGGUGaAGACGuCCCCgCGCGGCGUaCGg -3'
miRNA:   3'- -CCGCgUCUGUcGGGG-GCGCUGUAgGC- -5'
29103 3' -60.8 NC_006146.1 + 116064 0.66 0.759498
Target:  5'- uGGCGCAuGACAaaUgUgGCGACGUCCu -3'
miRNA:   3'- -CCGCGU-CUGUcgGgGgCGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 95228 0.66 0.759498
Target:  5'- aGGCGUccguuGAgCGGCCaugacugcugaCCCGCGGCGUCa- -3'
miRNA:   3'- -CCGCGu----CU-GUCGG-----------GGGCGCUGUAGgc -5'
29103 3' -60.8 NC_006146.1 + 72276 0.66 0.759498
Target:  5'- aGGCccagaAGGCAGUCaCCGUGACAUuuGg -3'
miRNA:   3'- -CCGcg---UCUGUCGGgGGCGCUGUAggC- -5'
29103 3' -60.8 NC_006146.1 + 40434 0.66 0.759498
Target:  5'- gGGCgGCAG-CGGCCCCguaggcgggUGCGGCAauggCCu -3'
miRNA:   3'- -CCG-CGUCuGUCGGGG---------GCGCUGUa---GGc -5'
29103 3' -60.8 NC_006146.1 + 86822 0.66 0.759498
Target:  5'- gGGUGCAGAUAucuccCCCCCGUGcAUAaauuUCCa -3'
miRNA:   3'- -CCGCGUCUGUc----GGGGGCGC-UGU----AGGc -5'
29103 3' -60.8 NC_006146.1 + 113539 0.66 0.759498
Target:  5'- cGGCGCcaccgccGCAGCCUCCcucacCGACAcCCGg -3'
miRNA:   3'- -CCGCGuc-----UGUCGGGGGc----GCUGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 19588 0.66 0.759498
Target:  5'- cGGCGCgaGGACAGCUCCUG-GcCcUCCu -3'
miRNA:   3'- -CCGCG--UCUGUCGGGGGCgCuGuAGGc -5'
29103 3' -60.8 NC_006146.1 + 67002 0.66 0.758587
Target:  5'- gGGUGUaggAGAUGGCCCgggugagCCGCG-UGUCCGg -3'
miRNA:   3'- -CCGCG---UCUGUCGGG-------GGCGCuGUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 75384 0.66 0.756763
Target:  5'- aGGCGCcgcacccGACAGCUCCCG-GAUAUggaggccuucucccCCGa -3'
miRNA:   3'- -CCGCGu------CUGUCGGGGGCgCUGUA--------------GGC- -5'
29103 3' -60.8 NC_006146.1 + 42717 0.66 0.750346
Target:  5'- cGGCGCcccccuGGGCcGCCUCC-CGGCGUCg- -3'
miRNA:   3'- -CCGCG------UCUGuCGGGGGcGCUGUAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.