miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 3' -60.8 NC_006146.1 + 122027 0.65 0.774816
Target:  5'- aGGCGCAGGCcuGGCgCCUGgaggcCGACGgcuucgcgcccgccUCCGa -3'
miRNA:   3'- -CCGCGUCUG--UCGgGGGC-----GCUGU--------------AGGC- -5'
29103 3' -60.8 NC_006146.1 + 118248 0.66 0.741099
Target:  5'- gGGCGaggcuGGAC-GCCCUCaugcgccagaGCGGCAUCCu -3'
miRNA:   3'- -CCGCg----UCUGuCGGGGG----------CGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 9899 0.66 0.741099
Target:  5'- aGGCGguGACGGCCaggCaggagGCGACGgagcCCGc -3'
miRNA:   3'- -CCGCguCUGUCGGg--Gg----CGCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 43892 0.66 0.738307
Target:  5'- uGCGCAGGCugggAGCCCacagagcuccgggaCCGCGuCGcCCGg -3'
miRNA:   3'- cCGCGUCUG----UCGGG--------------GGCGCuGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 64441 0.66 0.722353
Target:  5'- cGGCGCcgAGACAGCCUUgGgUGGCgcuGUCCu -3'
miRNA:   3'- -CCGCG--UCUGUCGGGGgC-GCUG---UAGGc -5'
29103 3' -60.8 NC_006146.1 + 117973 0.66 0.722353
Target:  5'- aGGCgGCGGACGaggccagcGCCCCCGgGGgG-CCa -3'
miRNA:   3'- -CCG-CGUCUGU--------CGGGGGCgCUgUaGGc -5'
29103 3' -60.8 NC_006146.1 + 103110 0.66 0.722353
Target:  5'- cGGgGCAGAgccUGGCCgCCGUcACGUCCc -3'
miRNA:   3'- -CCgCGUCU---GUCGGgGGCGcUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 56817 0.66 0.722352
Target:  5'- gGGCG-GGGCuucuGGCCCCCgagGCGGCcUCUGg -3'
miRNA:   3'- -CCGCgUCUG----UCGGGGG---CGCUGuAGGC- -5'
29103 3' -60.8 NC_006146.1 + 48274 0.66 0.722352
Target:  5'- uGGCGCgaaAGAgGGCCCCgGCcuCcUCCGc -3'
miRNA:   3'- -CCGCG---UCUgUCGGGGgCGcuGuAGGC- -5'
29103 3' -60.8 NC_006146.1 + 115412 0.66 0.747581
Target:  5'- aGGCaGCuGGCGGCCgggccucguucucgCCCGCGGcCAUCg- -3'
miRNA:   3'- -CCG-CGuCUGUCGG--------------GGGCGCU-GUAGgc -5'
29103 3' -60.8 NC_006146.1 + 42717 0.66 0.750346
Target:  5'- cGGCGCcccccuGGGCcGCCUCC-CGGCGUCg- -3'
miRNA:   3'- -CCGCG------UCUGuCGGGGGcGCUGUAGgc -5'
29103 3' -60.8 NC_006146.1 + 75384 0.66 0.756763
Target:  5'- aGGCGCcgcacccGACAGCUCCCG-GAUAUggaggccuucucccCCGa -3'
miRNA:   3'- -CCGCGu------CUGUCGGGGGCgCUGUA--------------GGC- -5'
29103 3' -60.8 NC_006146.1 + 791 0.66 0.768547
Target:  5'- gGGaCGCcccGcCGGCCCCCccuGCGGCG-CCGg -3'
miRNA:   3'- -CC-GCGu--CuGUCGGGGG---CGCUGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 119848 0.66 0.768547
Target:  5'- aGCgGCAGuCAucgggagaagauGCCUCCGUGGgAUCCGg -3'
miRNA:   3'- cCG-CGUCuGU------------CGGGGGCGCUgUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 42776 0.66 0.768547
Target:  5'- aGGUGCAGGCGGCg--CGUGGCcgCCu -3'
miRNA:   3'- -CCGCGUCUGUCGgggGCGCUGuaGGc -5'
29103 3' -60.8 NC_006146.1 + 20185 0.66 0.768547
Target:  5'- -uUGCAGAgGGCCCCCGgGggcGCAggaggCUGg -3'
miRNA:   3'- ccGCGUCUgUCGGGGGCgC---UGUa----GGC- -5'
29103 3' -60.8 NC_006146.1 + 19588 0.66 0.759498
Target:  5'- cGGCGCgaGGACAGCUCCUG-GcCcUCCu -3'
miRNA:   3'- -CCGCG--UCUGUCGGGGGCgCuGuAGGc -5'
29103 3' -60.8 NC_006146.1 + 113539 0.66 0.759498
Target:  5'- cGGCGCcaccgccGCAGCCUCCcucacCGACAcCCGg -3'
miRNA:   3'- -CCGCGuc-----UGUCGGGGGc----GCUGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 86822 0.66 0.759498
Target:  5'- gGGUGCAGAUAucuccCCCCCGUGcAUAaauuUCCa -3'
miRNA:   3'- -CCGCGUCUGUc----GGGGGCGC-UGU----AGGc -5'
29103 3' -60.8 NC_006146.1 + 40434 0.66 0.759498
Target:  5'- gGGCgGCAG-CGGCCCCguaggcgggUGCGGCAauggCCu -3'
miRNA:   3'- -CCG-CGUCuGUCGGGG---------GCGCUGUa---GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.