miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 3' -60.8 NC_006146.1 + 129067 1.11 0.000959
Target:  5'- cGGCGCAGACAGCCCCCGCGACAUCCGg -3'
miRNA:   3'- -CCGCGUCUGUCGGGGGCGCUGUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 58509 0.83 0.081809
Target:  5'- aGGCaCGG-CAGCCCCUGCGGCGUCCa -3'
miRNA:   3'- -CCGcGUCuGUCGGGGGCGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 48248 0.81 0.110757
Target:  5'- cGCGCGGAgGGCCCCCGCcGcCGUCCu -3'
miRNA:   3'- cCGCGUCUgUCGGGGGCG-CuGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 66721 0.8 0.128608
Target:  5'- gGGCGCAGACGG-CCCUGCGACuggAUCUGc -3'
miRNA:   3'- -CCGCGUCUGUCgGGGGCGCUG---UAGGC- -5'
29103 3' -60.8 NC_006146.1 + 44510 0.75 0.294429
Target:  5'- gGGCGCAGA-GGCCCCUGgUGGgAUCCa -3'
miRNA:   3'- -CCGCGUCUgUCGGGGGC-GCUgUAGGc -5'
29103 3' -60.8 NC_006146.1 + 68084 0.75 0.294429
Target:  5'- aGCGCAGA--GCCCCCGCGcgAUCCa -3'
miRNA:   3'- cCGCGUCUguCGGGGGCGCugUAGGc -5'
29103 3' -60.8 NC_006146.1 + 70617 0.75 0.294429
Target:  5'- cGGUGCAGGCcugccAGCCCCCGCuaggaGGC-UCCa -3'
miRNA:   3'- -CCGCGUCUG-----UCGGGGGCG-----CUGuAGGc -5'
29103 3' -60.8 NC_006146.1 + 44705 0.74 0.321477
Target:  5'- cGGCGguGGCcguGGCCCCCGCuGGCcggCCu -3'
miRNA:   3'- -CCGCguCUG---UCGGGGGCG-CUGua-GGc -5'
29103 3' -60.8 NC_006146.1 + 205 0.74 0.321477
Target:  5'- cGCGCc-GguGCCCCCGCGACGguccCCGg -3'
miRNA:   3'- cCGCGucUguCGGGGGCGCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 137887 0.73 0.35034
Target:  5'- gGGCcgGCAGGgGGUCCCCGUGgACAgggCCGg -3'
miRNA:   3'- -CCG--CGUCUgUCGGGGGCGC-UGUa--GGC- -5'
29103 3' -60.8 NC_006146.1 + 57381 0.73 0.365447
Target:  5'- uGGCGcCGGugGGCuggCCCCGCGACcgugcCCGg -3'
miRNA:   3'- -CCGC-GUCugUCG---GGGGCGCUGua---GGC- -5'
29103 3' -60.8 NC_006146.1 + 24369 0.73 0.373168
Target:  5'- uGGCGCAGGgcCAGCUCCagggCGCGGCGccuucgcucUCCGg -3'
miRNA:   3'- -CCGCGUCU--GUCGGGG----GCGCUGU---------AGGC- -5'
29103 3' -60.8 NC_006146.1 + 152027 0.72 0.388938
Target:  5'- aGUGgGGGCugaGGCCCCCGC-ACGUCCa -3'
miRNA:   3'- cCGCgUCUG---UCGGGGGCGcUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 161444 0.72 0.413397
Target:  5'- gGGCGCGGACcccgcGCCCaCCGUGACAc--- -3'
miRNA:   3'- -CCGCGUCUGu----CGGG-GGCGCUGUaggc -5'
29103 3' -60.8 NC_006146.1 + 120008 0.72 0.413397
Target:  5'- aGGCcCAGGCcGCaCCCGCGGCcaGUCCGg -3'
miRNA:   3'- -CCGcGUCUGuCGgGGGCGCUG--UAGGC- -5'
29103 3' -60.8 NC_006146.1 + 67996 0.72 0.43022
Target:  5'- gGGCGCAGccacgccacACGGCCCCU--GGCGUCCc -3'
miRNA:   3'- -CCGCGUC---------UGUCGGGGGcgCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 106685 0.72 0.43022
Target:  5'- aGGCGCAGAUGuGCCUccugccggagcuCCGCGACA-CCu -3'
miRNA:   3'- -CCGCGUCUGU-CGGG------------GGCGCUGUaGGc -5'
29103 3' -60.8 NC_006146.1 + 53771 0.71 0.438782
Target:  5'- gGGCGgaggucucgcCGGACgagggccucGGCCCgCGCGGCGUCCa -3'
miRNA:   3'- -CCGC----------GUCUG---------UCGGGgGCGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 115198 0.71 0.438782
Target:  5'- aGCgGCGGGCagAGCCCCCcgGCGGCggCCGu -3'
miRNA:   3'- cCG-CGUCUG--UCGGGGG--CGCUGuaGGC- -5'
29103 3' -60.8 NC_006146.1 + 155126 0.71 0.438782
Target:  5'- uGGUGgGGcaaGGUCCCCGCGGCGUCg- -3'
miRNA:   3'- -CCGCgUCug-UCGGGGGCGCUGUAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.