miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 3' -60.8 NC_006146.1 + 122261 0.71 0.444832
Target:  5'- aGGCGCuGGGCAcccgcccggagcccGCCCCCaCGGCAcCCGa -3'
miRNA:   3'- -CCGCG-UCUGU--------------CGGGGGcGCUGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 41633 0.71 0.447439
Target:  5'- gGGCGCAGAcCAGCCCC----ACAUCCc -3'
miRNA:   3'- -CCGCGUCU-GUCGGGGgcgcUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 117261 0.71 0.465034
Target:  5'- gGGCGCuGACuGagCCCCGCGAUccugCCGa -3'
miRNA:   3'- -CCGCGuCUGuCg-GGGGCGCUGua--GGC- -5'
29103 3' -60.8 NC_006146.1 + 56873 0.71 0.473965
Target:  5'- uGGgGCuGGCGGCCCCCGUGu--UCgGg -3'
miRNA:   3'- -CCgCGuCUGUCGGGGGCGCuguAGgC- -5'
29103 3' -60.8 NC_006146.1 + 71567 0.71 0.473966
Target:  5'- uGCGaCAGACAGCCagaGCGGCuUCCGc -3'
miRNA:   3'- cCGC-GUCUGUCGGgggCGCUGuAGGC- -5'
29103 3' -60.8 NC_006146.1 + 123163 0.71 0.473966
Target:  5'- gGGCGCGcGAggaGGCCCCgGaCGACGagcUCCGg -3'
miRNA:   3'- -CCGCGU-CUg--UCGGGGgC-GCUGU---AGGC- -5'
29103 3' -60.8 NC_006146.1 + 18959 0.71 0.482077
Target:  5'- uGGUGCGccaGCGGCCCCUagagaggGCGGCAgggCCGg -3'
miRNA:   3'- -CCGCGUc--UGUCGGGGG-------CGCUGUa--GGC- -5'
29103 3' -60.8 NC_006146.1 + 158091 0.71 0.482982
Target:  5'- uGCGCAccGGCAGCCgCCGUccguACGUCCGc -3'
miRNA:   3'- cCGCGU--CUGUCGGgGGCGc---UGUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 47567 0.7 0.49208
Target:  5'- cGGCGagaccccuGACGG-CCCCGCaGACGUCCc -3'
miRNA:   3'- -CCGCgu------CUGUCgGGGGCG-CUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 57095 0.7 0.49208
Target:  5'- uGCuGUAcGACAG-CCCCGCGACuuuGUCCGa -3'
miRNA:   3'- cCG-CGU-CUGUCgGGGGCGCUG---UAGGC- -5'
29103 3' -60.8 NC_006146.1 + 2710 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 1778 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 846 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 3642 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 117543 0.7 0.504949
Target:  5'- aGCGcCGGGcCAGCcaagaccucacgccgCCCCGCGGCcgCCGg -3'
miRNA:   3'- cCGC-GUCU-GUCG---------------GGGGCGCUGuaGGC- -5'
29103 3' -60.8 NC_006146.1 + 68339 0.7 0.504949
Target:  5'- uGGCGUcgaGGACGGCCUCCGCcgugucaguguugguGGCAaCCa -3'
miRNA:   3'- -CCGCG---UCUGUCGGGGGCG---------------CUGUaGGc -5'
29103 3' -60.8 NC_006146.1 + 37421 0.7 0.510509
Target:  5'- cGGUGCAagUAGCCCCgGUGACA-CCu -3'
miRNA:   3'- -CCGCGUcuGUCGGGGgCGCUGUaGGc -5'
29103 3' -60.8 NC_006146.1 + 32913 0.7 0.510509
Target:  5'- gGGCGCAccccccaccccGcCGGCCCCCGgGAgGcCCGg -3'
miRNA:   3'- -CCGCGU-----------CuGUCGGGGGCgCUgUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 10545 0.7 0.529218
Target:  5'- gGGCGCuGAgacgcCAGuUCCCCGUGACAUggaCCGu -3'
miRNA:   3'- -CCGCGuCU-----GUC-GGGGGCGCUGUA---GGC- -5'
29103 3' -60.8 NC_006146.1 + 167215 0.7 0.536773
Target:  5'- cGGCGCGcGGCcuucccccgucuGCUCCCGCGGCcaGUCCc -3'
miRNA:   3'- -CCGCGU-CUGu-----------CGGGGGCGCUG--UAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.