miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 3' -60.8 NC_006146.1 + 205 0.74 0.321477
Target:  5'- cGCGCc-GguGCCCCCGCGACGguccCCGg -3'
miRNA:   3'- cCGCGucUguCGGGGGCGCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 233 0.67 0.693724
Target:  5'- gGGCGCcccuGGCcuCCCCCGCGcCgAUCUGc -3'
miRNA:   3'- -CCGCGu---CUGucGGGGGCGCuG-UAGGC- -5'
29103 3' -60.8 NC_006146.1 + 444 0.67 0.692762
Target:  5'- gGGuCGCgGGACAcGCCCCCGgguccccCGGCAcgcgCCGg -3'
miRNA:   3'- -CC-GCG-UCUGU-CGGGGGC-------GCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 791 0.66 0.768547
Target:  5'- gGGaCGCcccGcCGGCCCCCccuGCGGCG-CCGg -3'
miRNA:   3'- -CC-GCGu--CuGUCGGGGG---CGCUGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 846 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 1136 0.69 0.59638
Target:  5'- cGCGCc-GguGCCCCCGCGAgGguccCCGg -3'
miRNA:   3'- cCGCGucUguCGGGGGCGCUgUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 1375 0.67 0.692762
Target:  5'- gGGuCGCgGGACAcGCCCCCGgguccccCGGCAcgcgCCGg -3'
miRNA:   3'- -CC-GCG-UCUGU-CGGGGGC-------GCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 1778 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 2068 0.69 0.59638
Target:  5'- cGCGCc-GguGCCCCCGCGAgGguccCCGg -3'
miRNA:   3'- cCGCGucUguCGGGGGCGCUgUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 2307 0.67 0.692762
Target:  5'- gGGuCGCgGGACAcGCCCCCGgguccccCGGCAcgcgCCGg -3'
miRNA:   3'- -CC-GCG-UCUGU-CGGGGGC-------GCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 2710 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 3000 0.69 0.59638
Target:  5'- cGCGCc-GguGCCCCCGCGAgGguccCCGg -3'
miRNA:   3'- cCGCGucUguCGGGGGCGCUgUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 3239 0.67 0.692762
Target:  5'- gGGuCGCgGGACAcGCCCCCGgguccccCGGCAcgcgCCGg -3'
miRNA:   3'- -CC-GCG-UCUGU-CGGGGGC-------GCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 3642 0.7 0.501258
Target:  5'- cGCGCGGcCccgGGCCCuCCcCGACAUCCa -3'
miRNA:   3'- cCGCGUCuG---UCGGG-GGcGCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 9122 0.67 0.703324
Target:  5'- aGGCGaAGAUucaGGCCCCCGCccaGGCGcCCc -3'
miRNA:   3'- -CCGCgUCUG---UCGGGGGCG---CUGUaGGc -5'
29103 3' -60.8 NC_006146.1 + 9899 0.66 0.741099
Target:  5'- aGGCGguGACGGCCaggCaggagGCGACGgagcCCGc -3'
miRNA:   3'- -CCGCguCUGUCGGg--Gg----CGCUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 10545 0.7 0.529218
Target:  5'- gGGCGCuGAgacgcCAGuUCCCCGUGACAUggaCCGu -3'
miRNA:   3'- -CCGCGuCU-----GUC-GGGGGCGCUGUA---GGC- -5'
29103 3' -60.8 NC_006146.1 + 13533 0.67 0.703324
Target:  5'- aGGCGUGGACAGgaaCCUGCuGCAggcgCCGg -3'
miRNA:   3'- -CCGCGUCUGUCgg-GGGCGcUGUa---GGC- -5'
29103 3' -60.8 NC_006146.1 + 15142 0.68 0.625636
Target:  5'- cGGCGgGGucuACAGCUCCUcggGCGACG-CCGu -3'
miRNA:   3'- -CCGCgUC---UGUCGGGGG---CGCUGUaGGC- -5'
29103 3' -60.8 NC_006146.1 + 18959 0.71 0.482077
Target:  5'- uGGUGCGccaGCGGCCCCUagagaggGCGGCAgggCCGg -3'
miRNA:   3'- -CCGCGUc--UGUCGGGGG-------CGCUGUa--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.