miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 3' -60.8 NC_006146.1 + 129067 1.11 0.000959
Target:  5'- cGGCGCAGACAGCCCCCGCGACAUCCGg -3'
miRNA:   3'- -CCGCGUCUGUCGGGGGCGCUGUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 47567 0.7 0.49208
Target:  5'- cGGCGagaccccuGACGG-CCCCGCaGACGUCCc -3'
miRNA:   3'- -CCGCgu------CUGUCgGGGGCG-CUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 167215 0.7 0.536773
Target:  5'- cGGCGCGcGGCcuucccccgucuGCUCCCGCGGCcaGUCCc -3'
miRNA:   3'- -CCGCGU-CUGu-----------CGGGGGCGCUG--UAGGc -5'
29103 3' -60.8 NC_006146.1 + 44252 0.66 0.768547
Target:  5'- cGGCGguGuCcauuGCCCCUGCGGgccCCGg -3'
miRNA:   3'- -CCGCguCuGu---CGGGGGCGCUguaGGC- -5'
29103 3' -60.8 NC_006146.1 + 137887 0.73 0.35034
Target:  5'- gGGCcgGCAGGgGGUCCCCGUGgACAgggCCGg -3'
miRNA:   3'- -CCG--CGUCUgUCGGGGGCGC-UGUa--GGC- -5'
29103 3' -60.8 NC_006146.1 + 57381 0.73 0.365447
Target:  5'- uGGCGcCGGugGGCuggCCCCGCGACcgugcCCGg -3'
miRNA:   3'- -CCGC-GUCugUCG---GGGGCGCUGua---GGC- -5'
29103 3' -60.8 NC_006146.1 + 120008 0.72 0.413397
Target:  5'- aGGCcCAGGCcGCaCCCGCGGCcaGUCCGg -3'
miRNA:   3'- -CCGcGUCUGuCGgGGGCGCUG--UAGGC- -5'
29103 3' -60.8 NC_006146.1 + 161444 0.72 0.413397
Target:  5'- gGGCGCGGACcccgcGCCCaCCGUGACAc--- -3'
miRNA:   3'- -CCGCGUCUGu----CGGG-GGCGCUGUaggc -5'
29103 3' -60.8 NC_006146.1 + 155126 0.71 0.438782
Target:  5'- uGGUGgGGcaaGGUCCCCGCGGCGUCg- -3'
miRNA:   3'- -CCGCgUCug-UCGGGGGCGCUGUAGgc -5'
29103 3' -60.8 NC_006146.1 + 57095 0.7 0.49208
Target:  5'- uGCuGUAcGACAG-CCCCGCGACuuuGUCCGa -3'
miRNA:   3'- cCG-CGU-CUGUCgGGGGCGCUG---UAGGC- -5'
29103 3' -60.8 NC_006146.1 + 41633 0.71 0.447439
Target:  5'- gGGCGCAGAcCAGCCCC----ACAUCCc -3'
miRNA:   3'- -CCGCGUCU-GUCGGGGgcgcUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 67996 0.72 0.43022
Target:  5'- gGGCGCAGccacgccacACGGCCCCU--GGCGUCCc -3'
miRNA:   3'- -CCGCGUC---------UGUCGGGGGcgCUGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 48248 0.81 0.110757
Target:  5'- cGCGCGGAgGGCCCCCGCcGcCGUCCu -3'
miRNA:   3'- cCGCGUCUgUCGGGGGCG-CuGUAGGc -5'
29103 3' -60.8 NC_006146.1 + 56873 0.71 0.473965
Target:  5'- uGGgGCuGGCGGCCCCCGUGu--UCgGg -3'
miRNA:   3'- -CCgCGuCUGUCGGGGGCGCuguAGgC- -5'
29103 3' -60.8 NC_006146.1 + 68084 0.75 0.294429
Target:  5'- aGCGCAGA--GCCCCCGCGcgAUCCa -3'
miRNA:   3'- cCGCGUCUguCGGGGGCGCugUAGGc -5'
29103 3' -60.8 NC_006146.1 + 106685 0.72 0.43022
Target:  5'- aGGCGCAGAUGuGCCUccugccggagcuCCGCGACA-CCu -3'
miRNA:   3'- -CCGCGUCUGU-CGGG------------GGCGCUGUaGGc -5'
29103 3' -60.8 NC_006146.1 + 158091 0.71 0.482982
Target:  5'- uGCGCAccGGCAGCCgCCGUccguACGUCCGc -3'
miRNA:   3'- cCGCGU--CUGUCGGgGGCGc---UGUAGGC- -5'
29103 3' -60.8 NC_006146.1 + 68339 0.7 0.504949
Target:  5'- uGGCGUcgaGGACGGCCUCCGCcgugucaguguugguGGCAaCCa -3'
miRNA:   3'- -CCGCG---UCUGUCGGGGGCG---------------CUGUaGGc -5'
29103 3' -60.8 NC_006146.1 + 44705 0.74 0.321477
Target:  5'- cGGCGguGGCcguGGCCCCCGCuGGCcggCCu -3'
miRNA:   3'- -CCGCguCUG---UCGGGGGCG-CUGua-GGc -5'
29103 3' -60.8 NC_006146.1 + 152027 0.72 0.388938
Target:  5'- aGUGgGGGCugaGGCCCCCGC-ACGUCCa -3'
miRNA:   3'- cCGCgUCUG---UCGGGGGCGcUGUAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.