miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 76923 0.66 0.878841
Target:  5'- cGCGGGgcugcAGCCGGguGAacugccgcuggaGGucGCCUGGGAc -3'
miRNA:   3'- aCGUCU-----UUGGCCguCU------------CC--CGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 70209 0.66 0.878841
Target:  5'- cGCAGc-GCCGGguGccgAGGGCCgcGAGc -3'
miRNA:   3'- aCGUCuuUGGCCguC---UCCCGGa-CUCu -5'
29103 5' -57.2 NC_006146.1 + 28098 0.66 0.871651
Target:  5'- aGUAGAGGCCcGCGGccauuGGGGCCagcaagcGAGAc -3'
miRNA:   3'- aCGUCUUUGGcCGUC-----UCCCGGa------CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169504 0.66 0.871651
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGaCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 170435 0.66 0.871651
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGaCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 15787 0.66 0.871651
Target:  5'- aGUAGAGGCCcGCGGccauuGGGGCCagcaagcGAGAc -3'
miRNA:   3'- aCGUCUUUGGcCGUC-----UCCCGGa------CUCU- -5'
29103 5' -57.2 NC_006146.1 + 12708 0.66 0.871651
Target:  5'- aGUAGAGGCCcGCGGccauuGGGGCCagcaagcGAGAc -3'
miRNA:   3'- aCGUCUUUGGcCGUC-----UCCCGGa------CUCU- -5'
29103 5' -57.2 NC_006146.1 + 18865 0.66 0.871651
Target:  5'- aGUAGAGGCCcGCGGccauuGGGGCCagcaagcGAGAc -3'
miRNA:   3'- aCGUCUUUGGcCGUC-----UCCCGGa------CUCU- -5'
29103 5' -57.2 NC_006146.1 + 25020 0.66 0.871651
Target:  5'- aGUAGAGGCCcGCGGccauuGGGGCCagcaagcGAGAc -3'
miRNA:   3'- aCGUCUUUGGcCGUC-----UCCCGGa------CUCU- -5'
29103 5' -57.2 NC_006146.1 + 15282 0.66 0.871651
Target:  5'- aGCGGcuGAACCGGagcgagggggaGGAGGGgCCgGAGGc -3'
miRNA:   3'- aCGUC--UUUGGCCg----------UCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 49058 0.66 0.871651
Target:  5'- aGCguaGGggGCUGGaucgaaGGAGGG-CUGAGGc -3'
miRNA:   3'- aCG---UCuuUGGCCg-----UCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 106929 0.66 0.871651
Target:  5'- aGCAGAAccucaGCCGGCuGAGuGuGCUuucugGAGAg -3'
miRNA:   3'- aCGUCUU-----UGGCCGuCUC-C-CGGa----CUCU- -5'
29103 5' -57.2 NC_006146.1 + 124993 0.66 0.871651
Target:  5'- gGCAcGGucACCGGCc--GGGCgCUGAGAa -3'
miRNA:   3'- aCGU-CUu-UGGCCGucuCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 160969 0.66 0.871651
Target:  5'- uUGCAGAAucACCaggcauuGCAGAGugaGGCCUGAc- -3'
miRNA:   3'- -ACGUCUU--UGGc------CGUCUC---CCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 163802 0.66 0.871651
Target:  5'- aGCGGAcauuGGCUGGCguugccagGGAGGGUg-GAGAa -3'
miRNA:   3'- aCGUCU----UUGGCCG--------UCUCCCGgaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 157095 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 154017 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 150939 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 147861 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 144783 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.