miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 170435 0.66 0.871651
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGaCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 108750 0.67 0.83675
Target:  5'- gUGCAgccaguuuuucccuGAGGCUGGCAgaaaucuGAGGGCCauagaaaUGAGGa -3'
miRNA:   3'- -ACGU--------------CUUUGGCCGU-------CUCCCGG-------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 44513 0.67 0.799021
Target:  5'- cGCAGAGGCCccuggugggauccauGGCAGgauauccuggaaaaGGGGCC-GGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUC--------------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 156023 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 129127 0.67 0.83263
Target:  5'- aGCGGgcGCCcgGGCGcAGGGCCUccggcGGGAa -3'
miRNA:   3'- aCGUCuuUGG--CCGUcUCCCGGA-----CUCU- -5'
29103 5' -57.2 NC_006146.1 + 65186 0.67 0.83263
Target:  5'- gGCucuuGGAGCCcuaGGCGcucuGGGGGCcCUGGGAg -3'
miRNA:   3'- aCGu---CUUUGG---CCGU----CUCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 88799 0.67 0.82171
Target:  5'- gGCGuGGAGCCugcugggcauguuuGGCu--GGGCCUGAGGc -3'
miRNA:   3'- aCGU-CUUUGG--------------CCGucuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 152945 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 149867 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 146789 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 100204 0.67 0.815709
Target:  5'- cGcCAGAGACaccaGGCGGcccGuGGCCUGAGu -3'
miRNA:   3'- aC-GUCUUUGg---CCGUCu--C-CCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 23975 0.67 0.815709
Target:  5'- gUGgGGGAGCCGGagAGGGGGCgaaaGAGGa -3'
miRNA:   3'- -ACgUCUUUGGCCg-UCUCCCGga--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 65187 0.67 0.814845
Target:  5'- aUGCGGAuguguguGACUGGCAGGGGGag-GAa- -3'
miRNA:   3'- -ACGUCU-------UUGGCCGUCUCCCggaCUcu -5'
29103 5' -57.2 NC_006146.1 + 100288 0.67 0.806997
Target:  5'- gGCGGAGGCa-GCAGAGG-CCgugGAGGc -3'
miRNA:   3'- aCGUCUUUGgcCGUCUCCcGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 168629 0.67 0.801693
Target:  5'- aGCGGggGgcuuccCCGGggcccgagcgcgcguCGGuGGGGCCUGAGGg -3'
miRNA:   3'- aCGUCuuU------GGCC---------------GUC-UCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 51469 0.67 0.804352
Target:  5'- gUGUGGAGAUgGGCGG-GGGCUgcggcgucgggaguUGGGAa -3'
miRNA:   3'- -ACGUCUUUGgCCGUCuCCCGG--------------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 54814 0.67 0.815709
Target:  5'- uUGgAGAGGacCCGGCGGAGGGCgggccaaauCUG-GAa -3'
miRNA:   3'- -ACgUCUUU--GGCCGUCUCCCG---------GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 137881 0.67 0.819148
Target:  5'- cGCcccGGGCCGGCAGgggguccccguggacAGGGCCgGGGGu -3'
miRNA:   3'- aCGuc-UUUGGCCGUC---------------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 15961 0.67 0.824256
Target:  5'- gGCAG--GCCGGUcucGGGUCUGGGGg -3'
miRNA:   3'- aCGUCuuUGGCCGucuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 127217 0.67 0.824256
Target:  5'- cGUAGugGCCuucuCGGAGGGCCUG-GAg -3'
miRNA:   3'- aCGUCuuUGGcc--GUCUCCCGGACuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.