miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 152945 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 100288 0.67 0.806997
Target:  5'- gGCGGAGGCa-GCAGAGG-CCgugGAGGc -3'
miRNA:   3'- aCGUCUUUGgcCGUCUCCcGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 88799 0.67 0.82171
Target:  5'- gGCGuGGAGCCugcugggcauguuuGGCu--GGGCCUGAGGc -3'
miRNA:   3'- aCGU-CUUUGG--------------CCGucuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 156023 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 44513 0.67 0.799021
Target:  5'- cGCAGAGGCCccuggugggauccauGGCAGgauauccuggaaaaGGGGCC-GGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUC--------------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 149867 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 146789 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 100204 0.67 0.815709
Target:  5'- cGcCAGAGACaccaGGCGGcccGuGGCCUGAGu -3'
miRNA:   3'- aC-GUCUUUGg---CCGUCu--C-CCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 24193 0.67 0.83263
Target:  5'- gGCAGAGGagGGCu--GGGCCUGcGAg -3'
miRNA:   3'- aCGUCUUUggCCGucuCCCGGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 161770 0.67 0.83263
Target:  5'- aGgGGgcGCCugGGCGG-GGGCCUGAa- -3'
miRNA:   3'- aCgUCuuUGG--CCGUCuCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 21924 0.67 0.824256
Target:  5'- cGgGGAAGCUGGCAGA-GGCCa---- -3'
miRNA:   3'- aCgUCUUUGGCCGUCUcCCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 16371 0.67 0.824256
Target:  5'- cGCAGGAgaaACacaCAGAGGGCCUGuuGAu -3'
miRNA:   3'- aCGUCUU---UGgccGUCUCCCGGACu-CU- -5'
29103 5' -57.2 NC_006146.1 + 51895 0.68 0.761251
Target:  5'- gGUGGAGGCugcguCGGCGG-GGGCCUccGAGGc -3'
miRNA:   3'- aCGUCUUUG-----GCCGUCuCCCGGA--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 29093 0.68 0.742096
Target:  5'- aGCAGAggUguGCAGAGGGCaCaGAGGg -3'
miRNA:   3'- aCGUCUuuGgcCGUCUCCCG-GaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 95451 0.68 0.779952
Target:  5'- aGCcGAGAagGGCAGgaaggGGGGCuCUGAGAg -3'
miRNA:   3'- aCGuCUUUggCCGUC-----UCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 115405 0.68 0.78911
Target:  5'- gUGCAGGAggcaGCUGGCGGccGGGCCUc--- -3'
miRNA:   3'- -ACGUCUU----UGGCCGUCu-CCCGGAcucu -5'
29103 5' -57.2 NC_006146.1 + 48238 0.68 0.78911
Target:  5'- gGguGAGcGCCGcGCGGAGGGCCc---- -3'
miRNA:   3'- aCguCUU-UGGC-CGUCUCCCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 46167 0.68 0.779952
Target:  5'- -cCAGGAAcuCCGGguG-GGGCCaGAGAg -3'
miRNA:   3'- acGUCUUU--GGCCguCuCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 150681 0.68 0.761251
Target:  5'- gGUGGGGAgUGGCcagggggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG---------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 115188 0.68 0.751726
Target:  5'- cGCGGAGGCCaGCGGcGGGCa-GAGc -3'
miRNA:   3'- aCGUCUUUGGcCGUCuCCCGgaCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.