Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29103 | 5' | -57.2 | NC_006146.1 | + | 99162 | 0.68 | 0.78911 |
Target: 5'- gGCAGG---UGGCGGAGGGCCa---- -3' miRNA: 3'- aCGUCUuugGCCGUCUCCCGGacucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 10521 | 0.68 | 0.750767 |
Target: 5'- uUGC-GAGACUgGGCGGccugccaAGGGCgCUGAGAc -3' miRNA: 3'- -ACGuCUUUGG-CCGUC-------UCCCG-GACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 57057 | 0.68 | 0.78911 |
Target: 5'- gGUuGAGGCgGG-AGGGGGCCUGAc- -3' miRNA: 3'- aCGuCUUUGgCCgUCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 147603 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 144525 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 33208 | 0.68 | 0.770663 |
Target: 5'- gGgGGAGGCCGGaGGGGGaGCC-GGGAu -3' miRNA: 3'- aCgUCUUUGGCCgUCUCC-CGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 150681 | 0.68 | 0.761251 |
Target: 5'- gGUGGGGAgUGGCcagggggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG---------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 115188 | 0.68 | 0.751726 |
Target: 5'- cGCGGAGGCCaGCGGcGGGCa-GAGc -3' miRNA: 3'- aCGUCUUUGGcCGUCuCCCGgaCUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 61600 | 0.68 | 0.751726 |
Target: 5'- cUGCAGcgGCC-GCGGccGGGGCC-GAGAu -3' miRNA: 3'- -ACGUCuuUGGcCGUC--UCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 93892 | 0.68 | 0.770663 |
Target: 5'- gGCGGAAuuugCGGCAGggGGGGCCagcacgGAGGc -3' miRNA: 3'- aCGUCUUug--GCCGUC--UCCCGGa-----CUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 153758 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 115405 | 0.68 | 0.78911 |
Target: 5'- gUGCAGGAggcaGCUGGCGGccGGGCCUc--- -3' miRNA: 3'- -ACGUCUU----UGGCCGUCu-CCCGGAcucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 60471 | 0.68 | 0.779952 |
Target: 5'- cGCGGGGAgCGGU-GAGaGGCCgGGGGg -3' miRNA: 3'- aCGUCUUUgGCCGuCUC-CCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 167417 | 0.68 | 0.755549 |
Target: 5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3' miRNA: 3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 109668 | 0.68 | 0.779952 |
Target: 5'- aGCAGAAGCCGacguacaagaGCAGAGgcaGGCagGAGAa -3' miRNA: 3'- aCGUCUUUGGC----------CGUCUC---CCGgaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 170212 | 0.68 | 0.755549 |
Target: 5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3' miRNA: 3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 46236 | 0.68 | 0.78911 |
Target: 5'- ---uGAAGCCGGagGGAGGGCCgGuGAa -3' miRNA: 3'- acguCUUUGGCCg-UCUCCCGGaCuCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 48238 | 0.68 | 0.78911 |
Target: 5'- gGguGAGcGCCGcGCGGAGGGCCc---- -3' miRNA: 3'- aCguCUU-UGGC-CGUCUCCCGGacucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 44536 | 0.68 | 0.78911 |
Target: 5'- gGCGGAGGaCGGUGGGGGGCUgcgGuGGa -3' miRNA: 3'- aCGUCUUUgGCCGUCUCCCGGa--CuCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 156836 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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