miRNA display CGI


Results 1 - 20 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 129101 1.09 0.002195
Target:  5'- gUGCAGAAACCGGCAGAGGGCCUGAGAg -3'
miRNA:   3'- -ACGUCUUUGGCCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 112515 0.87 0.067617
Target:  5'- -cCAGggGCCGGUGGAGGGCCUGGGu -3'
miRNA:   3'- acGUCuuUGGCCGUCUCCCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 137225 0.86 0.081476
Target:  5'- --aGGAAGCCGGguGGGGGCCUGGGGu -3'
miRNA:   3'- acgUCUUUGGCCguCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 137038 0.85 0.090575
Target:  5'- --aGGAGGCCGGguGGGGGCCUGGGGu -3'
miRNA:   3'- acgUCUUUGGCCguCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 60122 0.77 0.301414
Target:  5'- gUGCaAGggGCCGGgGGAGGGaCCUGGu- -3'
miRNA:   3'- -ACG-UCuuUGGCCgUCUCCC-GGACUcu -5'
29103 5' -57.2 NC_006146.1 + 40065 0.76 0.322786
Target:  5'- cGUAGGAcagcgucucCCGGCGGAGGGCCUGcAGc -3'
miRNA:   3'- aCGUCUUu--------GGCCGUCUCCCGGAC-UCu -5'
29103 5' -57.2 NC_006146.1 + 130351 0.76 0.330157
Target:  5'- cGCAGcuucACUGuGCAGAGGGgCUGAGAg -3'
miRNA:   3'- aCGUCuu--UGGC-CGUCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 95309 0.75 0.368854
Target:  5'- cGguGggGCaguaGGCgcGGAGGGUCUGGGAg -3'
miRNA:   3'- aCguCuuUGg---CCG--UCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 112758 0.75 0.393521
Target:  5'- cGCAGAAGCCGGCc-AGGGCauguaaaaaUGAGGc -3'
miRNA:   3'- aCGUCUUUGGCCGucUCCCGg--------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 158545 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 143154 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 149310 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 152388 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 155466 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 146232 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 151578 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 157733 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 154656 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 148500 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 145422 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.