miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 142344 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 168474 0.74 0.422737
Target:  5'- cGCAGAu-CCGGCcucacguccacggucGGGGGGCCgGGGAc -3'
miRNA:   3'- aCGUCUuuGGCCG---------------UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 167758 0.74 0.445031
Target:  5'- cGCAGggGCCGGguGGGcgcgcauGGCUcGAGAc -3'
miRNA:   3'- aCGUCuuUGGCCguCUC-------CCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 39422 0.73 0.464257
Target:  5'- aGCAGAAGuuGGCc-GGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUggCCGucUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 159981 0.73 0.473564
Target:  5'- cGCAGGAGCCcGCAGuuGGGGUCUGGc- -3'
miRNA:   3'- aCGUCUUUGGcCGUC--UCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 158421 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 155342 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 152264 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 149186 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 146108 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 143030 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 170093 0.73 0.491499
Target:  5'- gGCGGGAgggGCCGGCgccgcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG-------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 119823 0.73 0.492451
Target:  5'- gGCGGggGaCCGGcCAGAGGaCCUGgAGAu -3'
miRNA:   3'- aCGUCuuU-GGCC-GUCUCCcGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 169161 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 168229 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167297 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167640 0.72 0.511679
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 53238 0.72 0.521409
Target:  5'- aGCAGcuACCGGUGGAGG-CCUG-GAu -3'
miRNA:   3'- aCGUCuuUGGCCGUCUCCcGGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 88852 0.72 0.521409
Target:  5'- gGUAgGGAAUCGGC--GGGGCCUGGGGc -3'
miRNA:   3'- aCGU-CUUUGGCCGucUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 40668 0.72 0.53121
Target:  5'- --uGGAGACUGGUGGuGGGCuCUGAGGc -3'
miRNA:   3'- acgUCUUUGGCCGUCuCCCG-GACUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.