miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 14806 0.72 0.551004
Target:  5'- aGgAGAGGCCGGCc--GGGCCgGAGGa -3'
miRNA:   3'- aCgUCUUUGGCCGucuCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 52814 0.72 0.560987
Target:  5'- uUGCAcGAGGCCGugcccaggauGCGGAGGGCC-GAGc -3'
miRNA:   3'- -ACGU-CUUUGGC----------CGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 150451 0.72 0.560987
Target:  5'- uUGUAGAAGCCGGaCAG-GGGCUgGAuGAc -3'
miRNA:   3'- -ACGUCUUUGGCC-GUCuCCCGGaCU-CU- -5'
29103 5' -57.2 NC_006146.1 + 170492 0.71 0.581092
Target:  5'- aGCGGGgggcuuccccgGACCcccagcgcgcGGCGGgcGGGGCCUGAGGg -3'
miRNA:   3'- aCGUCU-----------UUGG----------CCGUC--UCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170384 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169453 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167589 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 168521 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 105198 0.71 0.581092
Target:  5'- gGCcgGGGAGCCGGgGGugcccGGuGCCUGAGAc -3'
miRNA:   3'- aCG--UCUUUGGCCgUCu----CC-CGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 40002 0.71 0.591203
Target:  5'- cGUAGugGCCGGUgugggcguagcAGGGGGCCUGcuGGGg -3'
miRNA:   3'- aCGUCuuUGGCCG-----------UCUCCCGGAC--UCU- -5'
29103 5' -57.2 NC_006146.1 + 169230 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 168298 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 167366 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170161 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 151442 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 145286 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 157598 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 148364 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 142208 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 154520 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.