miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 79693 0.71 0.610488
Target:  5'- aGCAGAGACCGGCcaacaggcaggcgGGGGGGaacaggaaaCCUG-GAu -3'
miRNA:   3'- aCGUCUUUGGCCG-------------UCUCCC---------GGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 60786 0.71 0.611505
Target:  5'- aGUGGGAGCCGGacCAGguccAGGGCCUGGu- -3'
miRNA:   3'- aCGUCUUUGGCC--GUC----UCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 79758 0.7 0.621683
Target:  5'- gGCGGAGAagaaGGCacgAGAGGGCUgGAGAa -3'
miRNA:   3'- aCGUCUUUgg--CCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 21990 0.7 0.642056
Target:  5'- cGgGGAAGCUGGUGGAGGGCaaGAc- -3'
miRNA:   3'- aCgUCUUUGGCCGUCUCCCGgaCUcu -5'
29103 5' -57.2 NC_006146.1 + 51144 0.7 0.652234
Target:  5'- aGCAGGugacgAAgCGGCAGAGGGCgccgCUGuGGg -3'
miRNA:   3'- aCGUCU-----UUgGCCGUCUCCCG----GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 64210 0.7 0.662396
Target:  5'- cGCGGAGcuCCGGCAgGAGGcacaucugcGCCUGGGc -3'
miRNA:   3'- aCGUCUUu-GGCCGU-CUCC---------CGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 151170 0.7 0.672535
Target:  5'- aGCAGGAugCGGCGGuAGcGGCCg---- -3'
miRNA:   3'- aCGUCUUugGCCGUC-UC-CCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 77915 0.7 0.672535
Target:  5'- cGCAGggGCgGGCGGccucgcAGGuGCCgGGGGu -3'
miRNA:   3'- aCGUCuuUGgCCGUC------UCC-CGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 115156 0.7 0.672535
Target:  5'- uUGUuGAAAaacgcCCGGCAGGGacuguaaaGGCCUGGGAc -3'
miRNA:   3'- -ACGuCUUU-----GGCCGUCUC--------CCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 124498 0.7 0.676581
Target:  5'- cGCGGGAcucggccuggucucgGCCcuGGCGagggacGGGGGCCUGGGGg -3'
miRNA:   3'- aCGUCUU---------------UGG--CCGU------CUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 105857 0.69 0.692704
Target:  5'- cGCAGu-GCCGcuccucGCAGuGGGCcCUGGGAc -3'
miRNA:   3'- aCGUCuuUGGC------CGUCuCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 75494 0.69 0.702719
Target:  5'- gGCGGggGCCGGCAaGAGcaccaGCgUGAGc -3'
miRNA:   3'- aCGUCuuUGGCCGU-CUCc----CGgACUCu -5'
29103 5' -57.2 NC_006146.1 + 51511 0.69 0.702719
Target:  5'- uUGUGGGGuCUGGCGG-GGGUUUGGGAg -3'
miRNA:   3'- -ACGUCUUuGGCCGUCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 99562 0.69 0.703717
Target:  5'- gGCAGAGAUCGGgguccaggagguagaAGAcGGGCUUGGGGc -3'
miRNA:   3'- aCGUCUUUGGCCg--------------UCU-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 86494 0.69 0.712674
Target:  5'- gGCAGcuGGGCCuugaggGGCAGcuGGGCUUGAGGg -3'
miRNA:   3'- aCGUC--UUUGG------CCGUCu-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 45047 0.69 0.722562
Target:  5'- gGCcGggGCCGGCucccuAGGGGcGgCUGAGGu -3'
miRNA:   3'- aCGuCuuUGGCCG-----UCUCC-CgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 46780 0.69 0.722562
Target:  5'- gGCGGAuggcuggccGGCCGGCGcGAGGGCaaaggccuCUGGGu -3'
miRNA:   3'- aCGUCU---------UUGGCCGU-CUCCCG--------GACUCu -5'
29103 5' -57.2 NC_006146.1 + 123695 0.69 0.722562
Target:  5'- gGCGGAGG-CGGCcaGGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCGucUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 114305 0.69 0.732372
Target:  5'- gGCgaGGAGACCGGCGGcGGGCUcGGc- -3'
miRNA:   3'- aCG--UCUUUGGCCGUCuCCCGGaCUcu -5'
29103 5' -57.2 NC_006146.1 + 71156 0.69 0.732372
Target:  5'- gGguGGGACCGGCAcuGuGGCUUGGGu -3'
miRNA:   3'- aCguCUUUGGCCGUcuC-CCGGACUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.