miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 114305 0.69 0.732372
Target:  5'- gGCgaGGAGACCGGCGGcGGGCUcGGc- -3'
miRNA:   3'- aCG--UCUUUGGCCGUCuCCCGGaCUcu -5'
29103 5' -57.2 NC_006146.1 + 29093 0.68 0.742096
Target:  5'- aGCAGAggUguGCAGAGGGCaCaGAGGg -3'
miRNA:   3'- aCGUCUuuGgcCGUCUCCCG-GaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 167720 0.68 0.742096
Target:  5'- aGCGcGcgUCGGguG-GGGCCUGAGGg -3'
miRNA:   3'- aCGUcUuuGGCCguCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 169585 0.68 0.742096
Target:  5'- aGCGcGcgUCGGguG-GGGCCUGAGGg -3'
miRNA:   3'- aCGUcUuuGGCCguCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 85602 0.68 0.742096
Target:  5'- cGCcucGGAAGCUGGCAccggggcaaAGGGCCaGAGAg -3'
miRNA:   3'- aCG---UCUUUGGCCGUc--------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 10521 0.68 0.750767
Target:  5'- uUGC-GAGACUgGGCGGccugccaAGGGCgCUGAGAc -3'
miRNA:   3'- -ACGuCUUUGG-CCGUC-------UCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 115188 0.68 0.751726
Target:  5'- cGCGGAGGCCaGCGGcGGGCa-GAGc -3'
miRNA:   3'- aCGUCUUUGGcCGUCuCCCGgaCUCu -5'
29103 5' -57.2 NC_006146.1 + 61600 0.68 0.751726
Target:  5'- cUGCAGcgGCC-GCGGccGGGGCC-GAGAu -3'
miRNA:   3'- -ACGUCuuUGGcCGUC--UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 47045 0.68 0.755549
Target:  5'- gUGCgagaAGggGCCGGUcgccggugucggugaGGGGGcGCCUGAcGAa -3'
miRNA:   3'- -ACG----UCuuUGGCCG---------------UCUCC-CGGACU-CU- -5'
29103 5' -57.2 NC_006146.1 + 169281 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 168349 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 167417 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 170212 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 150681 0.68 0.761251
Target:  5'- gGUGGGGAgUGGCcagggggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG---------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 44301 0.68 0.761251
Target:  5'- cGCc-AAACCGGUAGuGGGGgCUGGGGc -3'
miRNA:   3'- aCGucUUUGGCCGUC-UCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 51895 0.68 0.761251
Target:  5'- gGUGGAGGCugcguCGGCGG-GGGCCUccGAGGc -3'
miRNA:   3'- aCGUCUUUG-----GCCGUCuCCCGGA--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 144525 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 141447 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 147603 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 33208 0.68 0.770663
Target:  5'- gGgGGAGGCCGGaGGGGGaGCC-GGGAu -3'
miRNA:   3'- aCgUCUUUGGCCgUCUCC-CGGaCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.