Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29103 | 5' | -57.2 | NC_006146.1 | + | 33208 | 0.68 | 0.770663 |
Target: 5'- gGgGGAGGCCGGaGGGGGaGCC-GGGAu -3' miRNA: 3'- aCgUCUUUGGCCgUCUCC-CGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 144525 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 147603 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 153758 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 109668 | 0.68 | 0.779952 |
Target: 5'- aGCAGAAGCCGacguacaagaGCAGAGgcaGGCagGAGAa -3' miRNA: 3'- aCGUCUUUGGC----------CGUCUC---CCGgaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 60471 | 0.68 | 0.779952 |
Target: 5'- cGCGGGGAgCGGU-GAGaGGCCgGGGGg -3' miRNA: 3'- aCGUCUUUgGCCGuCUC-CCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 95451 | 0.68 | 0.779952 |
Target: 5'- aGCcGAGAagGGCAGgaaggGGGGCuCUGAGAg -3' miRNA: 3'- aCGuCUUUggCCGUC-----UCCCG-GACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 46167 | 0.68 | 0.779952 |
Target: 5'- -cCAGGAAcuCCGGguG-GGGCCaGAGAg -3' miRNA: 3'- acGUCUUU--GGCCguCuCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 115405 | 0.68 | 0.78911 |
Target: 5'- gUGCAGGAggcaGCUGGCGGccGGGCCUc--- -3' miRNA: 3'- -ACGUCUU----UGGCCGUCu-CCCGGAcucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 48238 | 0.68 | 0.78911 |
Target: 5'- gGguGAGcGCCGcGCGGAGGGCCc---- -3' miRNA: 3'- aCguCUU-UGGC-CGUCUCCCGGacucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 44536 | 0.68 | 0.78911 |
Target: 5'- gGCGGAGGaCGGUGGGGGGCUgcgGuGGa -3' miRNA: 3'- aCGUCUUUgGCCGUCUCCCGGa--CuCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 46236 | 0.68 | 0.78911 |
Target: 5'- ---uGAAGCCGGagGGAGGGCCgGuGAa -3' miRNA: 3'- acguCUUUGGCCg-UCUCCCGGaCuCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 57057 | 0.68 | 0.78911 |
Target: 5'- gGUuGAGGCgGG-AGGGGGCCUGAc- -3' miRNA: 3'- aCGuCUUUGgCCgUCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 86546 | 0.68 | 0.78911 |
Target: 5'- gGCAGcuGGGCUugaggGGCAGcuGGGCUUGAGGg -3' miRNA: 3'- aCGUC--UUUGG-----CCGUCu-CCCGGACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 99162 | 0.68 | 0.78911 |
Target: 5'- gGCAGG---UGGCGGAGGGCCa---- -3' miRNA: 3'- aCGUCUuugGCCGUCUCCCGGacucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 12836 | 0.68 | 0.78911 |
Target: 5'- -cCGGcgGCCGGacccgaGGAGGcGCCUGGGGc -3' miRNA: 3'- acGUCuuUGGCCg-----UCUCC-CGGACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 86580 | 0.68 | 0.78911 |
Target: 5'- gGCAGcuGGGCUugaggGGCAGcuGGGCUUGAGGg -3' miRNA: 3'- aCGUC--UUUGG-----CCGUCu-CCCGGACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 129237 | 0.67 | 0.794537 |
Target: 5'- aGCAGGGACgGGCccaggugaggcgcGAGGGUCaGGGAu -3' miRNA: 3'- aCGUCUUUGgCCGu------------CUCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 65770 | 0.67 | 0.798127 |
Target: 5'- aGCuGGAACgGGUAGAGGaGCUucgUGAGc -3' miRNA: 3'- aCGuCUUUGgCCGUCUCC-CGG---ACUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 39858 | 0.67 | 0.798127 |
Target: 5'- gGCGGggGcugugugcCCGGgGGAGGaGgCUGAGGc -3' miRNA: 3'- aCGUCuuU--------GGCCgUCUCC-CgGACUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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