miRNA display CGI


Results 41 - 60 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 119950 0.66 0.840823
Target:  5'- cUGcCGGAGGucUCGGUGGGGGGUCagGAGAc -3'
miRNA:   3'- -AC-GUCUUU--GGCCGUCUCCCGGa-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 108750 0.67 0.83675
Target:  5'- gUGCAgccaguuuuucccuGAGGCUGGCAgaaaucuGAGGGCCauagaaaUGAGGa -3'
miRNA:   3'- -ACGU--------------CUUUGGCCGU-------CUCCCGG-------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 24193 0.67 0.83263
Target:  5'- gGCAGAGGagGGCu--GGGCCUGcGAg -3'
miRNA:   3'- aCGUCUUUggCCGucuCCCGGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 161770 0.67 0.83263
Target:  5'- aGgGGgcGCCugGGCGG-GGGCCUGAa- -3'
miRNA:   3'- aCgUCuuUGG--CCGUCuCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 129127 0.67 0.83263
Target:  5'- aGCGGgcGCCcgGGCGcAGGGCCUccggcGGGAa -3'
miRNA:   3'- aCGUCuuUGG--CCGUcUCCCGGA-----CUCU- -5'
29103 5' -57.2 NC_006146.1 + 2476 0.67 0.83263
Target:  5'- gGCGGuguGGCCGGCGGGGgcaggcagcuGGCCgacGAGc -3'
miRNA:   3'- aCGUCu--UUGGCCGUCUC----------CCGGa--CUCu -5'
29103 5' -57.2 NC_006146.1 + 151623 0.67 0.83263
Target:  5'- cGCuccaccGAGAcCCGGCAGGGGGUCUu--- -3'
miRNA:   3'- aCGu-----CUUU-GGCCGUCUCCCGGAcucu -5'
29103 5' -57.2 NC_006146.1 + 65186 0.67 0.83263
Target:  5'- gGCucuuGGAGCCcuaGGCGcucuGGGGGCcCUGGGAg -3'
miRNA:   3'- aCGu---CUUUGG---CCGU----CUCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 127217 0.67 0.824256
Target:  5'- cGUAGugGCCuucuCGGAGGGCCUG-GAg -3'
miRNA:   3'- aCGUCuuUGGcc--GUCUCCCGGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 15961 0.67 0.824256
Target:  5'- gGCAG--GCCGGUcucGGGUCUGGGGg -3'
miRNA:   3'- aCGUCuuUGGCCGucuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 16371 0.67 0.824256
Target:  5'- cGCAGGAgaaACacaCAGAGGGCCUGuuGAu -3'
miRNA:   3'- aCGUCUU---UGgccGUCUCCCGGACu-CU- -5'
29103 5' -57.2 NC_006146.1 + 21924 0.67 0.824256
Target:  5'- cGgGGAAGCUGGCAGA-GGCCa---- -3'
miRNA:   3'- aCgUCUUUGGCCGUCUcCCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 88799 0.67 0.82171
Target:  5'- gGCGuGGAGCCugcugggcauguuuGGCu--GGGCCUGAGGc -3'
miRNA:   3'- aCGU-CUUUGG--------------CCGucuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 137881 0.67 0.819148
Target:  5'- cGCcccGGGCCGGCAGgggguccccguggacAGGGCCgGGGGu -3'
miRNA:   3'- aCGuc-UUUGGCCGUC---------------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 54814 0.67 0.815709
Target:  5'- uUGgAGAGGacCCGGCGGAGGGCgggccaaauCUG-GAa -3'
miRNA:   3'- -ACgUCUUU--GGCCGUCUCCCG---------GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 156023 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 149867 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 100204 0.67 0.815709
Target:  5'- cGcCAGAGACaccaGGCGGcccGuGGCCUGAGu -3'
miRNA:   3'- aC-GUCUUUGg---CCGUCu--C-CCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 152945 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 23975 0.67 0.815709
Target:  5'- gUGgGGGAGCCGGagAGGGGGCgaaaGAGGa -3'
miRNA:   3'- -ACgUCUUUGGCCg-UCUCCCGga--CUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.