miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 86580 0.68 0.78911
Target:  5'- gGCAGcuGGGCUugaggGGCAGcuGGGCUUGAGGg -3'
miRNA:   3'- aCGUC--UUUGG-----CCGUCu-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 109668 0.68 0.779952
Target:  5'- aGCAGAAGCCGacguacaagaGCAGAGgcaGGCagGAGAa -3'
miRNA:   3'- aCGUCUUUGGC----------CGUCUC---CCGgaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 60471 0.68 0.779952
Target:  5'- cGCGGGGAgCGGU-GAGaGGCCgGGGGg -3'
miRNA:   3'- aCGUCUUUgGCCGuCUC-CCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 46167 0.68 0.779952
Target:  5'- -cCAGGAAcuCCGGguG-GGGCCaGAGAg -3'
miRNA:   3'- acGUCUUU--GGCCguCuCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 95451 0.68 0.779952
Target:  5'- aGCcGAGAagGGCAGgaaggGGGGCuCUGAGAg -3'
miRNA:   3'- aCGuCUUUggCCGUC-----UCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 156836 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 153758 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 147603 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 5224 0.68 0.770663
Target:  5'- gUGCAGGuccuuGCCGGCcucGGGGCUgUGGGGu -3'
miRNA:   3'- -ACGUCUu----UGGCCGuc-UCCCGG-ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 141447 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 33208 0.68 0.770663
Target:  5'- gGgGGAGGCCGGaGGGGGaGCC-GGGAu -3'
miRNA:   3'- aCgUCUUUGGCCgUCUCC-CGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 144525 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 93892 0.68 0.770663
Target:  5'- gGCGGAAuuugCGGCAGggGGGGCCagcacgGAGGc -3'
miRNA:   3'- aCGUCUUug--GCCGUC--UCCCGGa-----CUCU- -5'
29103 5' -57.2 NC_006146.1 + 44301 0.68 0.761251
Target:  5'- cGCc-AAACCGGUAGuGGGGgCUGGGGc -3'
miRNA:   3'- aCGucUUUGGCCGUC-UCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 150681 0.68 0.761251
Target:  5'- gGUGGGGAgUGGCcagggggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG---------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 51895 0.68 0.761251
Target:  5'- gGUGGAGGCugcguCGGCGG-GGGCCUccGAGGc -3'
miRNA:   3'- aCGUCUUUG-----GCCGUCuCCCGGA--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169281 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 168349 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 170212 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 47045 0.68 0.755549
Target:  5'- gUGCgagaAGggGCCGGUcgccggugucggugaGGGGGcGCCUGAcGAa -3'
miRNA:   3'- -ACG----UCuuUGGCCG---------------UCUCC-CGGACU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.