miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 39422 0.73 0.464257
Target:  5'- aGCAGAAGuuGGCc-GGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUggCCGucUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 39858 0.67 0.798127
Target:  5'- gGCGGggGcugugugcCCGGgGGAGGaGgCUGAGGc -3'
miRNA:   3'- aCGUCuuU--------GGCCgUCUCC-CgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 40002 0.71 0.591203
Target:  5'- cGUAGugGCCGGUgugggcguagcAGGGGGCCUGcuGGGg -3'
miRNA:   3'- aCGUCuuUGGCCG-----------UCUCCCGGAC--UCU- -5'
29103 5' -57.2 NC_006146.1 + 40065 0.76 0.322786
Target:  5'- cGUAGGAcagcgucucCCGGCGGAGGGCCUGcAGc -3'
miRNA:   3'- aCGUCUUu--------GGCCGUCUCCCGGAC-UCu -5'
29103 5' -57.2 NC_006146.1 + 40668 0.72 0.53121
Target:  5'- --uGGAGACUGGUGGuGGGCuCUGAGGc -3'
miRNA:   3'- acgUCUUUGGCCGUCuCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 44301 0.68 0.761251
Target:  5'- cGCc-AAACCGGUAGuGGGGgCUGGGGc -3'
miRNA:   3'- aCGucUUUGGCCGUC-UCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 44513 0.67 0.799021
Target:  5'- cGCAGAGGCCccuggugggauccauGGCAGgauauccuggaaaaGGGGCC-GGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUC--------------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 44536 0.68 0.78911
Target:  5'- gGCGGAGGaCGGUGGGGGGCUgcgGuGGa -3'
miRNA:   3'- aCGUCUUUgGCCGUCUCCCGGa--CuCU- -5'
29103 5' -57.2 NC_006146.1 + 45047 0.69 0.722562
Target:  5'- gGCcGggGCCGGCucccuAGGGGcGgCUGAGGu -3'
miRNA:   3'- aCGuCuuUGGCCG-----UCUCC-CgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 45348 0.66 0.859708
Target:  5'- gGgGGAGGCCGGUacccaacgggaGGAGGGUCUucguguucguagaagGAGGg -3'
miRNA:   3'- aCgUCUUUGGCCG-----------UCUCCCGGA---------------CUCU- -5'
29103 5' -57.2 NC_006146.1 + 46167 0.68 0.779952
Target:  5'- -cCAGGAAcuCCGGguG-GGGCCaGAGAg -3'
miRNA:   3'- acGUCUUU--GGCCguCuCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 46236 0.68 0.78911
Target:  5'- ---uGAAGCCGGagGGAGGGCCgGuGAa -3'
miRNA:   3'- acguCUUUGGCCg-UCUCCCGGaCuCU- -5'
29103 5' -57.2 NC_006146.1 + 46780 0.69 0.722562
Target:  5'- gGCGGAuggcuggccGGCCGGCGcGAGGGCaaaggccuCUGGGu -3'
miRNA:   3'- aCGUCU---------UUGGCCGU-CUCCCG--------GACUCu -5'
29103 5' -57.2 NC_006146.1 + 47045 0.68 0.755549
Target:  5'- gUGCgagaAGggGCCGGUcgccggugucggugaGGGGGcGCCUGAcGAa -3'
miRNA:   3'- -ACG----UCuuUGGCCG---------------UCUCC-CGGACU-CU- -5'
29103 5' -57.2 NC_006146.1 + 48238 0.68 0.78911
Target:  5'- gGguGAGcGCCGcGCGGAGGGCCc---- -3'
miRNA:   3'- aCguCUU-UGGC-CGUCUCCCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 49058 0.66 0.871651
Target:  5'- aGCguaGGggGCUGGaucgaaGGAGGG-CUGAGGc -3'
miRNA:   3'- aCG---UCuuUGGCCg-----UCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 51144 0.7 0.652234
Target:  5'- aGCAGGugacgAAgCGGCAGAGGGCgccgCUGuGGg -3'
miRNA:   3'- aCGUCU-----UUgGCCGUCUCCCG----GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 51469 0.67 0.804352
Target:  5'- gUGUGGAGAUgGGCGG-GGGCUgcggcgucgggaguUGGGAa -3'
miRNA:   3'- -ACGUCUUUGgCCGUCuCCCGG--------------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 51511 0.69 0.702719
Target:  5'- uUGUGGGGuCUGGCGG-GGGUUUGGGAg -3'
miRNA:   3'- -ACGUCUUuGGCCGUCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 51895 0.68 0.761251
Target:  5'- gGUGGAGGCugcguCGGCGG-GGGCCUccGAGGc -3'
miRNA:   3'- aCGUCUUUG-----GCCGUCuCCCGGA--CUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.