miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 52024 0.66 0.864249
Target:  5'- gGCAGuccgCGGCGGAGGGgCUGu-- -3'
miRNA:   3'- aCGUCuuugGCCGUCUCCCgGACucu -5'
29103 5' -57.2 NC_006146.1 + 52814 0.72 0.560987
Target:  5'- uUGCAcGAGGCCGugcccaggauGCGGAGGGCC-GAGc -3'
miRNA:   3'- -ACGU-CUUUGGC----------CGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 53238 0.72 0.521409
Target:  5'- aGCAGcuACCGGUGGAGG-CCUG-GAu -3'
miRNA:   3'- aCGUCuuUGGCCGUCUCCcGGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 53772 0.66 0.856639
Target:  5'- gGCGGAGgucucGCCGGaC-GAGGGCCUcGGc -3'
miRNA:   3'- aCGUCUU-----UGGCC-GuCUCCCGGAcUCu -5'
29103 5' -57.2 NC_006146.1 + 54814 0.67 0.815709
Target:  5'- uUGgAGAGGacCCGGCGGAGGGCgggccaaauCUG-GAa -3'
miRNA:   3'- -ACgUCUUU--GGCCGUCUCCCG---------GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 54922 0.66 0.848829
Target:  5'- -uCAGGGACCGGCAGuaGGCCUcGAc- -3'
miRNA:   3'- acGUCUUUGGCCGUCucCCGGA-CUcu -5'
29103 5' -57.2 NC_006146.1 + 57057 0.68 0.78911
Target:  5'- gGUuGAGGCgGG-AGGGGGCCUGAc- -3'
miRNA:   3'- aCGuCUUUGgCCgUCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 60122 0.77 0.301414
Target:  5'- gUGCaAGggGCCGGgGGAGGGaCCUGGu- -3'
miRNA:   3'- -ACG-UCuuUGGCCgUCUCCC-GGACUcu -5'
29103 5' -57.2 NC_006146.1 + 60471 0.68 0.779952
Target:  5'- cGCGGGGAgCGGU-GAGaGGCCgGGGGg -3'
miRNA:   3'- aCGUCUUUgGCCGuCUC-CCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 60786 0.71 0.611505
Target:  5'- aGUGGGAGCCGGacCAGguccAGGGCCUGGu- -3'
miRNA:   3'- aCGUCUUUGGCC--GUC----UCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 60876 0.66 0.863497
Target:  5'- aUGCAGccccugcAGACCGGCcuGGGGCCcaguGGAu -3'
miRNA:   3'- -ACGUC-------UUUGGCCGucUCCCGGac--UCU- -5'
29103 5' -57.2 NC_006146.1 + 61600 0.68 0.751726
Target:  5'- cUGCAGcgGCC-GCGGccGGGGCC-GAGAu -3'
miRNA:   3'- -ACGUCuuUGGcCGUC--UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 64210 0.7 0.662396
Target:  5'- cGCGGAGcuCCGGCAgGAGGcacaucugcGCCUGGGc -3'
miRNA:   3'- aCGUCUUu-GGCCGU-CUCC---------CGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 65186 0.67 0.83263
Target:  5'- gGCucuuGGAGCCcuaGGCGcucuGGGGGCcCUGGGAg -3'
miRNA:   3'- aCGu---CUUUGG---CCGU----CUCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 65187 0.67 0.814845
Target:  5'- aUGCGGAuguguguGACUGGCAGGGGGag-GAa- -3'
miRNA:   3'- -ACGUCU-------UUGGCCGUCUCCCggaCUcu -5'
29103 5' -57.2 NC_006146.1 + 65482 0.66 0.840823
Target:  5'- gUGCGGGugcugagcuGGCCGGCGuGGGGCUgguuggugUGGGGu -3'
miRNA:   3'- -ACGUCU---------UUGGCCGUcUCCCGG--------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 65770 0.67 0.798127
Target:  5'- aGCuGGAACgGGUAGAGGaGCUucgUGAGc -3'
miRNA:   3'- aCGuCUUUGgCCGUCUCC-CGG---ACUCu -5'
29103 5' -57.2 NC_006146.1 + 70209 0.66 0.878841
Target:  5'- cGCAGc-GCCGGguGccgAGGGCCgcGAGc -3'
miRNA:   3'- aCGUCuuUGGCCguC---UCCCGGa-CUCu -5'
29103 5' -57.2 NC_006146.1 + 71156 0.69 0.732372
Target:  5'- gGguGGGACCGGCAcuGuGGCUUGGGu -3'
miRNA:   3'- aCguCUUUGGCCGUcuC-CCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 75494 0.69 0.702719
Target:  5'- gGCGGggGCCGGCAaGAGcaccaGCgUGAGc -3'
miRNA:   3'- aCGUCuuUGGCCGU-CUCc----CGgACUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.