miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 76923 0.66 0.878841
Target:  5'- cGCGGGgcugcAGCCGGguGAacugccgcuggaGGucGCCUGGGAc -3'
miRNA:   3'- aCGUCU-----UUGGCCguCU------------CC--CGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 77915 0.7 0.672535
Target:  5'- cGCAGggGCgGGCGGccucgcAGGuGCCgGGGGu -3'
miRNA:   3'- aCGUCuuUGgCCGUC------UCC-CGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 79693 0.71 0.610488
Target:  5'- aGCAGAGACCGGCcaacaggcaggcgGGGGGGaacaggaaaCCUG-GAu -3'
miRNA:   3'- aCGUCUUUGGCCG-------------UCUCCC---------GGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 79758 0.7 0.621683
Target:  5'- gGCGGAGAagaaGGCacgAGAGGGCUgGAGAa -3'
miRNA:   3'- aCGUCUUUgg--CCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 85602 0.68 0.742096
Target:  5'- cGCcucGGAAGCUGGCAccggggcaaAGGGCCaGAGAg -3'
miRNA:   3'- aCG---UCUUUGGCCGUc--------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 86494 0.69 0.712674
Target:  5'- gGCAGcuGGGCCuugaggGGCAGcuGGGCUUGAGGg -3'
miRNA:   3'- aCGUC--UUUGG------CCGUCu-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 86546 0.68 0.78911
Target:  5'- gGCAGcuGGGCUugaggGGCAGcuGGGCUUGAGGg -3'
miRNA:   3'- aCGUC--UUUGG-----CCGUCu-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 86580 0.68 0.78911
Target:  5'- gGCAGcuGGGCUugaggGGCAGcuGGGCUUGAGGg -3'
miRNA:   3'- aCGUC--UUUGG-----CCGUCu-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 88799 0.67 0.82171
Target:  5'- gGCGuGGAGCCugcugggcauguuuGGCu--GGGCCUGAGGc -3'
miRNA:   3'- aCGU-CUUUGG--------------CCGucuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 88852 0.72 0.521409
Target:  5'- gGUAgGGAAUCGGC--GGGGCCUGGGGc -3'
miRNA:   3'- aCGU-CUUUGGCCGucUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 90172 0.66 0.867235
Target:  5'- gGUAGAGGCCgcggcaggggagguaGuGCAGGGGGCa-GAGGg -3'
miRNA:   3'- aCGUCUUUGG---------------C-CGUCUCCCGgaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 93892 0.68 0.770663
Target:  5'- gGCGGAAuuugCGGCAGggGGGGCCagcacgGAGGc -3'
miRNA:   3'- aCGUCUUug--GCCGUC--UCCCGGa-----CUCU- -5'
29103 5' -57.2 NC_006146.1 + 95309 0.75 0.368854
Target:  5'- cGguGggGCaguaGGCgcGGAGGGUCUGGGAg -3'
miRNA:   3'- aCguCuuUGg---CCG--UCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 95451 0.68 0.779952
Target:  5'- aGCcGAGAagGGCAGgaaggGGGGCuCUGAGAg -3'
miRNA:   3'- aCGuCUUUggCCGUC-----UCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 99162 0.68 0.78911
Target:  5'- gGCAGG---UGGCGGAGGGCCa---- -3'
miRNA:   3'- aCGUCUuugGCCGUCUCCCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 99562 0.69 0.703717
Target:  5'- gGCAGAGAUCGGgguccaggagguagaAGAcGGGCUUGGGGc -3'
miRNA:   3'- aCGUCUUUGGCCg--------------UCU-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 100204 0.67 0.815709
Target:  5'- cGcCAGAGACaccaGGCGGcccGuGGCCUGAGu -3'
miRNA:   3'- aC-GUCUUUGg---CCGUCu--C-CCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 100286 0.66 0.848829
Target:  5'- aGCGGggGCUGGCA---GGCCUGc-- -3'
miRNA:   3'- aCGUCuuUGGCCGUcucCCGGACucu -5'
29103 5' -57.2 NC_006146.1 + 100288 0.67 0.806997
Target:  5'- gGCGGAGGCa-GCAGAGG-CCgugGAGGc -3'
miRNA:   3'- aCGUCUUUGgcCGUCUCCcGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 105198 0.71 0.581092
Target:  5'- gGCcgGGGAGCCGGgGGugcccGGuGCCUGAGAc -3'
miRNA:   3'- aCG--UCUUUGGCCgUCu----CC-CGGACUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.